Hb_000413_240

Information

Type -
Description -
Location Contig413: 175882-178164
Sequence    

Annotation

kegg
ID rcu:RCOM_0906490
description DNA binding protein, putative
nr
ID XP_012091424.1
description PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
swissprot
ID Q9FH37
description Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1
trembl
ID A0A067JLE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21291 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor ilr3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40938: 173526-175105 , PASA_asmbl_40940: 173633-174968 , PASA_asmbl_40941: 175946-178140 , PASA_asmbl_40942: 175946-177173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_240 0.0 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
2 Hb_000163_100 0.0572051187 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
3 Hb_001863_380 0.0686439637 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
4 Hb_000390_090 0.0711000455 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
5 Hb_004041_020 0.0766433015 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
6 Hb_000413_060 0.0796904864 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
7 Hb_002946_190 0.0808120731 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
8 Hb_000599_260 0.0833570562 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
9 Hb_000429_040 0.0914825758 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
10 Hb_000832_190 0.0950386797 - - Rab3 [Hevea brasiliensis]
11 Hb_001105_170 0.0953719318 - - PREDICTED: uncharacterized protein LOC105642727 isoform X1 [Jatropha curcas]
12 Hb_000012_250 0.0955660951 - - hypothetical protein L484_019524 [Morus notabilis]
13 Hb_001178_010 0.0958684289 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
14 Hb_006132_090 0.0962341994 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
15 Hb_003077_020 0.0967682965 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_002759_190 0.099723576 - - PREDICTED: protein NLRC3 [Jatropha curcas]
17 Hb_003119_060 0.1004708131 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
18 Hb_012799_170 0.1005870072 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
19 Hb_005167_010 0.1013933382 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
20 Hb_000003_780 0.1014471214 - - hexokinase [Manihot esculenta]

Gene co-expression network

sample Hb_000413_240 Hb_000413_240 Hb_000163_100 Hb_000163_100 Hb_000413_240--Hb_000163_100 Hb_001863_380 Hb_001863_380 Hb_000413_240--Hb_001863_380 Hb_000390_090 Hb_000390_090 Hb_000413_240--Hb_000390_090 Hb_004041_020 Hb_004041_020 Hb_000413_240--Hb_004041_020 Hb_000413_060 Hb_000413_060 Hb_000413_240--Hb_000413_060 Hb_002946_190 Hb_002946_190 Hb_000413_240--Hb_002946_190 Hb_000163_100--Hb_000413_060 Hb_000163_100--Hb_001863_380 Hb_000163_100--Hb_002946_190 Hb_000012_250 Hb_000012_250 Hb_000163_100--Hb_000012_250 Hb_000429_040 Hb_000429_040 Hb_000163_100--Hb_000429_040 Hb_001863_380--Hb_002946_190 Hb_002343_040 Hb_002343_040 Hb_001863_380--Hb_002343_040 Hb_012565_070 Hb_012565_070 Hb_001863_380--Hb_012565_070 Hb_000373_050 Hb_000373_050 Hb_001863_380--Hb_000373_050 Hb_002759_190 Hb_002759_190 Hb_001863_380--Hb_002759_190 Hb_009252_060 Hb_009252_060 Hb_000390_090--Hb_009252_060 Hb_000390_090--Hb_000413_060 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_011053_010 Hb_011053_010 Hb_000390_090--Hb_011053_010 Hb_004041_020--Hb_002946_190 Hb_004041_020--Hb_001863_380 Hb_004041_020--Hb_000429_040 Hb_000599_260 Hb_000599_260 Hb_004041_020--Hb_000599_260 Hb_004041_020--Hb_012565_070 Hb_003556_030 Hb_003556_030 Hb_000413_060--Hb_003556_030 Hb_000413_060--Hb_011053_010 Hb_001541_110 Hb_001541_110 Hb_000413_060--Hb_001541_110 Hb_000690_190 Hb_000690_190 Hb_002946_190--Hb_000690_190 Hb_146673_010 Hb_146673_010 Hb_002946_190--Hb_146673_010 Hb_001472_100 Hb_001472_100 Hb_002946_190--Hb_001472_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5461 6.49037 30.1937 15.3851 8.43876 8.70469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3851 25.7044 11.9038 7.27246 16.3045

CAGE analysis