Hb_000413_260

Information

Type -
Description -
Location Contig413: 189322-192314
Sequence    

Annotation

kegg
ID rcu:RCOM_0906170
description kinase, putative
nr
ID XP_002518556.1
description kinase, putative [Ricinus communis]
swissprot
ID Q8H199
description Cysteine-rich receptor-like protein kinase 14 OS=Arabidopsis thaliana GN=CRK14 PE=2 SV=2
trembl
ID B9RXT7
description Kinase, putative OS=Ricinus communis GN=RCOM_0906170 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cysteine-rich rlk

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40946: 189347-189860 , PASA_asmbl_40947: 191640-192450
cDNA
(Sanger)
(ID:Location)		 029_G05.ab1: 189347-189860

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_260 0.0 - - kinase, putative [Ricinus communis]
2 Hb_007007_110 0.1243168415 - - hypothetical protein JCGZ_14479 [Jatropha curcas]
3 Hb_047725_010 0.1412149164 - - ceramidase, putative [Ricinus communis]
4 Hb_073973_180 0.1413147568 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
5 Hb_000417_230 0.1493441187 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002107_080 0.1505470632 - - JHL20J20.3 [Jatropha curcas]
7 Hb_004659_110 0.1542728602 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
8 Hb_003031_070 0.156925423 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Jatropha curcas]
9 Hb_004968_050 0.1595571239 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
10 Hb_011609_060 0.1683451453 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]
11 Hb_094839_010 0.1691765368 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000318_320 0.1727239345 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
13 Hb_002025_120 0.1747160792 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
14 Hb_043115_010 0.1748283888 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
15 Hb_161045_010 0.1789379793 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
16 Hb_009787_020 0.1791950141 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
17 Hb_005714_140 0.1797162935 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_003800_010 0.1816320989 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
19 Hb_165552_020 0.1821337418 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_172240_010 0.1825749776 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]

Gene co-expression network

sample Hb_000413_260 Hb_000413_260 Hb_007007_110 Hb_007007_110 Hb_000413_260--Hb_007007_110 Hb_047725_010 Hb_047725_010 Hb_000413_260--Hb_047725_010 Hb_073973_180 Hb_073973_180 Hb_000413_260--Hb_073973_180 Hb_000417_230 Hb_000417_230 Hb_000413_260--Hb_000417_230 Hb_002107_080 Hb_002107_080 Hb_000413_260--Hb_002107_080 Hb_004659_110 Hb_004659_110 Hb_000413_260--Hb_004659_110 Hb_007007_110--Hb_047725_010 Hb_003031_070 Hb_003031_070 Hb_007007_110--Hb_003031_070 Hb_000318_320 Hb_000318_320 Hb_007007_110--Hb_000318_320 Hb_007007_110--Hb_004659_110 Hb_011609_060 Hb_011609_060 Hb_007007_110--Hb_011609_060 Hb_047725_010--Hb_003031_070 Hb_047725_010--Hb_000318_320 Hb_009787_020 Hb_009787_020 Hb_047725_010--Hb_009787_020 Hb_077562_010 Hb_077562_010 Hb_047725_010--Hb_077562_010 Hb_047725_010--Hb_004659_110 Hb_094839_010 Hb_094839_010 Hb_073973_180--Hb_094839_010 Hb_073973_180--Hb_000417_230 Hb_073973_180--Hb_002107_080 Hb_161045_010 Hb_161045_010 Hb_073973_180--Hb_161045_010 Hb_001098_020 Hb_001098_020 Hb_073973_180--Hb_001098_020 Hb_010573_030 Hb_010573_030 Hb_073973_180--Hb_010573_030 Hb_000417_230--Hb_094839_010 Hb_000417_230--Hb_002107_080 Hb_000417_230--Hb_010573_030 Hb_003071_040 Hb_003071_040 Hb_000417_230--Hb_003071_040 Hb_004968_050 Hb_004968_050 Hb_000417_230--Hb_004968_050 Hb_002107_080--Hb_094839_010 Hb_002107_080--Hb_004968_050 Hb_002107_080--Hb_000318_320 Hb_002107_080--Hb_010573_030 Hb_002025_120 Hb_002025_120 Hb_004659_110--Hb_002025_120 Hb_012395_260 Hb_012395_260 Hb_004659_110--Hb_012395_260 Hb_004007_190 Hb_004007_190 Hb_004659_110--Hb_004007_190 Hb_004659_110--Hb_009787_020 Hb_010267_030 Hb_010267_030 Hb_004659_110--Hb_010267_030 Hb_000201_070 Hb_000201_070 Hb_004659_110--Hb_000201_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.03755 0.052261 0.622235 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.033601 0 0.0748941

CAGE analysis