Hb_000414_040

Information

Type -
Description -
Location Contig414: 69130-71280
Sequence    

Annotation

kegg
ID csv:101204386
description uncharacterized LOC101204386
nr
ID XP_006379276.1
description hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
swissprot
ID Q9SKP9
description Proline-rich protein 2 OS=Arabidopsis thaliana GN=PRP2 PE=2 SV=1
trembl
ID U5G0U5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13250g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40990: 69483-69865 , PASA_asmbl_40991: 69994-71369
cDNA
(Sanger)
(ID:Location)		 016_C21.ab1: 70726-71361 , 017_C10.ab1: 70708-71364 , 025_N18.ab1: 70442-71369 , 051_K01.ab1: 70462-71372 , 051_L09.ab1: 70430-71314

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000414_040 0.0 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
2 Hb_005797_020 0.0183832641 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
3 Hb_000174_120 0.0291275572 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
4 Hb_011433_010 0.0319011269 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
5 Hb_001433_210 0.0338582929 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
6 Hb_009692_050 0.0365116807 - - -
7 Hb_003836_040 0.0464575409 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
8 Hb_003392_060 0.046748933 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
9 Hb_015807_120 0.0475668575 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
10 Hb_014361_160 0.0507034198 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
11 Hb_003605_170 0.0508180834 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
12 Hb_002284_290 0.0518247914 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
13 Hb_071557_010 0.0543945182 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
14 Hb_000210_020 0.0575650134 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
15 Hb_000740_010 0.0584158789 - - cytochrome P450, putative [Ricinus communis]
16 Hb_002245_050 0.0599759054 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
17 Hb_000821_030 0.0601050174 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
18 Hb_147976_010 0.0604028437 - - -
19 Hb_003598_070 0.0605007511 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000635_240 0.0606259194 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]

Gene co-expression network

sample Hb_000414_040 Hb_000414_040 Hb_005797_020 Hb_005797_020 Hb_000414_040--Hb_005797_020 Hb_000174_120 Hb_000174_120 Hb_000414_040--Hb_000174_120 Hb_011433_010 Hb_011433_010 Hb_000414_040--Hb_011433_010 Hb_001433_210 Hb_001433_210 Hb_000414_040--Hb_001433_210 Hb_009692_050 Hb_009692_050 Hb_000414_040--Hb_009692_050 Hb_003836_040 Hb_003836_040 Hb_000414_040--Hb_003836_040 Hb_005797_020--Hb_011433_010 Hb_005797_020--Hb_000174_120 Hb_005797_020--Hb_003836_040 Hb_014361_160 Hb_014361_160 Hb_005797_020--Hb_014361_160 Hb_005797_020--Hb_009692_050 Hb_000174_120--Hb_009692_050 Hb_000174_120--Hb_003836_040 Hb_002284_290 Hb_002284_290 Hb_000174_120--Hb_002284_290 Hb_003605_170 Hb_003605_170 Hb_000174_120--Hb_003605_170 Hb_011433_010--Hb_014361_160 Hb_003392_060 Hb_003392_060 Hb_011433_010--Hb_003392_060 Hb_171810_030 Hb_171810_030 Hb_011433_010--Hb_171810_030 Hb_000053_010 Hb_000053_010 Hb_011433_010--Hb_000053_010 Hb_001433_210--Hb_009692_050 Hb_001546_140 Hb_001546_140 Hb_001433_210--Hb_001546_140 Hb_147976_010 Hb_147976_010 Hb_001433_210--Hb_147976_010 Hb_031862_210 Hb_031862_210 Hb_001433_210--Hb_031862_210 Hb_001433_210--Hb_000174_120 Hb_009692_050--Hb_147976_010 Hb_003598_070 Hb_003598_070 Hb_009692_050--Hb_003598_070 Hb_009692_050--Hb_002284_290 Hb_003836_040--Hb_003605_170 Hb_003836_040--Hb_002284_290 Hb_000210_020 Hb_000210_020 Hb_003836_040--Hb_000210_020 Hb_000834_160 Hb_000834_160 Hb_003836_040--Hb_000834_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0136559 0.190893 1067.65 184.847 0 0.0856421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00784081 764.943

CAGE analysis