Hb_000414_080

Information

Type -
Description -
Location Contig414: 138989-144780
Sequence    

Annotation

kegg
ID rcu:RCOM_0660930
description triosephosphate isomerase, putative (EC:5.3.1.1)
nr
ID XP_012084383.1
description PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
swissprot
ID P48496
description Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1
trembl
ID A0A067JUE4
description Triosephosphate isomerase OS=Jatropha curcas GN=JCGZ_19591 PE=3 SV=1
Gene Ontology
ID GO:0005739
description triosephosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41000: 138939-144738
cDNA
(Sanger)
(ID:Location)		 001_B13.ab1: 138942-143912 , 003_H09.ab1: 138942-143863 , 011_H08.ab1: 138942-143917 , 025_G04.ab1: 138942-143923 , 045_B22.ab1: 138939-143888

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000414_080 0.0 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
2 Hb_000487_370 0.0660304612 - - -
3 Hb_000510_190 0.0734281558 - - glutathione reductase [Hevea brasiliensis]
4 Hb_002249_080 0.0867756535 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
5 Hb_000422_080 0.0928964066 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
6 Hb_003175_070 0.0929516222 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
7 Hb_002374_450 0.0946631747 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
8 Hb_000594_060 0.0961824261 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
9 Hb_001865_100 0.0968350299 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
10 Hb_032631_070 0.0981490703 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
11 Hb_003847_040 0.098536796 - - adenosine diphosphatase, putative [Ricinus communis]
12 Hb_009296_020 0.1010385934 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
13 Hb_001411_130 0.1016213914 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
14 Hb_002044_160 0.1021436228 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
15 Hb_009193_010 0.1024085912 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
16 Hb_004052_110 0.1024639124 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
17 Hb_000566_010 0.1041647382 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
18 Hb_002828_060 0.105095546 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
19 Hb_000579_040 0.1062086864 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
20 Hb_000025_540 0.1063802591 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]

Gene co-expression network

sample Hb_000414_080 Hb_000414_080 Hb_000487_370 Hb_000487_370 Hb_000414_080--Hb_000487_370 Hb_000510_190 Hb_000510_190 Hb_000414_080--Hb_000510_190 Hb_002249_080 Hb_002249_080 Hb_000414_080--Hb_002249_080 Hb_000422_080 Hb_000422_080 Hb_000414_080--Hb_000422_080 Hb_003175_070 Hb_003175_070 Hb_000414_080--Hb_003175_070 Hb_002374_450 Hb_002374_450 Hb_000414_080--Hb_002374_450 Hb_000487_370--Hb_000510_190 Hb_000594_060 Hb_000594_060 Hb_000487_370--Hb_000594_060 Hb_004052_110 Hb_004052_110 Hb_000487_370--Hb_004052_110 Hb_001059_060 Hb_001059_060 Hb_000487_370--Hb_001059_060 Hb_000487_370--Hb_002249_080 Hb_002828_060 Hb_002828_060 Hb_000510_190--Hb_002828_060 Hb_000510_190--Hb_002249_080 Hb_009296_020 Hb_009296_020 Hb_000510_190--Hb_009296_020 Hb_003490_060 Hb_003490_060 Hb_000510_190--Hb_003490_060 Hb_000585_110 Hb_000585_110 Hb_002249_080--Hb_000585_110 Hb_006916_050 Hb_006916_050 Hb_002249_080--Hb_006916_050 Hb_000007_090 Hb_000007_090 Hb_002249_080--Hb_000007_090 Hb_015884_020 Hb_015884_020 Hb_002249_080--Hb_015884_020 Hb_002249_080--Hb_002828_060 Hb_004943_040 Hb_004943_040 Hb_000422_080--Hb_004943_040 Hb_000422_080--Hb_000487_370 Hb_000342_170 Hb_000342_170 Hb_000422_080--Hb_000342_170 Hb_000283_140 Hb_000283_140 Hb_000422_080--Hb_000283_140 Hb_000422_080--Hb_002249_080 Hb_003175_070--Hb_000594_060 Hb_003847_040 Hb_003847_040 Hb_003175_070--Hb_003847_040 Hb_007594_080 Hb_007594_080 Hb_003175_070--Hb_007594_080 Hb_002675_080 Hb_002675_080 Hb_003175_070--Hb_002675_080 Hb_004545_080 Hb_004545_080 Hb_003175_070--Hb_004545_080 Hb_001348_090 Hb_001348_090 Hb_002374_450--Hb_001348_090 Hb_000441_050 Hb_000441_050 Hb_002374_450--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_002374_450--Hb_004242_170 Hb_002044_160 Hb_002044_160 Hb_002374_450--Hb_002044_160 Hb_000951_120 Hb_000951_120 Hb_002374_450--Hb_000951_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1696 56.9123 122.3 117.213 21.4555 19.1831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.8624 17.2171 17.9563 58.6694 157.036

CAGE analysis