Hb_000414_110

Information

Type -
Description -
Location Contig414: 191464-195078
Sequence    

Annotation

kegg
ID pop:POPTR_0012s04810g
description POPTRDRAFT_892254; hypothetical protein
nr
ID XP_011039092.1
description PREDICTED: MATE efflux family protein 5 isoform X1 [Populus euphratica]
swissprot
ID Q9SIA3
description MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2
trembl
ID B9I2H9
description MATE efflux family protein OS=Populus trichocarpa GN=POPTR_0012s04810g PE=3 SV=2
Gene Ontology
ID GO:0016021
description mate efflux family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41004: 179863-191780 , PASA_asmbl_41005: 191788-192377 , PASA_asmbl_41006: 192447-192980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000414_110 0.0 - - PREDICTED: MATE efflux family protein 5 isoform X1 [Populus euphratica]
2 Hb_000417_320 0.1341289218 - - hypothetical protein CICLE_v10000333mg [Citrus clementina]
3 Hb_028811_010 0.1453787892 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
4 Hb_000165_210 0.1614764891 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
5 Hb_000808_170 0.1668640993 - - protein disulfide isomerase, putative [Ricinus communis]
6 Hb_000061_090 0.1749405044 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
7 Hb_002291_010 0.1845258968 - - ring finger protein, putative [Ricinus communis]
8 Hb_000120_390 0.1887531083 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
9 Hb_001486_030 0.1903039853 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006846_120 0.1933700722 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
11 Hb_011909_010 0.1958863819 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
12 Hb_039145_010 0.196062781 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
13 Hb_014894_010 0.1963101549 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
14 Hb_119494_010 0.2009641426 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
15 Hb_000879_190 0.2024297909 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000853_060 0.2067303742 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
17 Hb_003207_010 0.2075030223 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
18 Hb_006453_010 0.2079436266 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
19 Hb_002005_100 0.2115531471 - - -
20 Hb_012545_090 0.2128917776 - - hypothetical protein JCGZ_04320 [Jatropha curcas]

Gene co-expression network

sample Hb_000414_110 Hb_000414_110 Hb_000417_320 Hb_000417_320 Hb_000414_110--Hb_000417_320 Hb_028811_010 Hb_028811_010 Hb_000414_110--Hb_028811_010 Hb_000165_210 Hb_000165_210 Hb_000414_110--Hb_000165_210 Hb_000808_170 Hb_000808_170 Hb_000414_110--Hb_000808_170 Hb_000061_090 Hb_000061_090 Hb_000414_110--Hb_000061_090 Hb_002291_010 Hb_002291_010 Hb_000414_110--Hb_002291_010 Hb_119494_010 Hb_119494_010 Hb_000417_320--Hb_119494_010 Hb_014894_010 Hb_014894_010 Hb_000417_320--Hb_014894_010 Hb_000318_200 Hb_000318_200 Hb_000417_320--Hb_000318_200 Hb_039145_010 Hb_039145_010 Hb_000417_320--Hb_039145_010 Hb_000417_320--Hb_028811_010 Hb_001486_030 Hb_001486_030 Hb_028811_010--Hb_001486_030 Hb_001623_160 Hb_001623_160 Hb_028811_010--Hb_001623_160 Hb_001214_090 Hb_001214_090 Hb_028811_010--Hb_001214_090 Hb_011909_010 Hb_011909_010 Hb_028811_010--Hb_011909_010 Hb_004064_010 Hb_004064_010 Hb_028811_010--Hb_004064_010 Hb_000853_060 Hb_000853_060 Hb_000165_210--Hb_000853_060 Hb_000120_390 Hb_000120_390 Hb_000165_210--Hb_000120_390 Hb_001206_090 Hb_001206_090 Hb_000165_210--Hb_001206_090 Hb_002304_140 Hb_002304_140 Hb_000165_210--Hb_002304_140 Hb_000879_190 Hb_000879_190 Hb_000165_210--Hb_000879_190 Hb_001731_030 Hb_001731_030 Hb_000808_170--Hb_001731_030 Hb_006846_120 Hb_006846_120 Hb_000808_170--Hb_006846_120 Hb_000041_060 Hb_000041_060 Hb_000808_170--Hb_000041_060 Hb_000317_350 Hb_000317_350 Hb_000808_170--Hb_000317_350 Hb_003207_010 Hb_003207_010 Hb_000808_170--Hb_003207_010 Hb_073171_100 Hb_073171_100 Hb_000808_170--Hb_073171_100 Hb_000061_090--Hb_000879_190 Hb_007423_020 Hb_007423_020 Hb_000061_090--Hb_007423_020 Hb_000011_290 Hb_000011_290 Hb_000061_090--Hb_000011_290 Hb_003947_040 Hb_003947_040 Hb_000061_090--Hb_003947_040 Hb_002539_020 Hb_002539_020 Hb_000061_090--Hb_002539_020 Hb_002291_010--Hb_001486_030 Hb_002291_010--Hb_028811_010 Hb_001341_100 Hb_001341_100 Hb_002291_010--Hb_001341_100 Hb_002291_010--Hb_003207_010 Hb_001171_050 Hb_001171_050 Hb_002291_010--Hb_001171_050 Hb_002291_010--Hb_004064_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24698 2.54626 1.40452 0.679182 0.321163 0.427314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.60883 1.70201 2.25581 10.3828 2.35474

CAGE analysis