Hb_000416_040

Information

Type transcription factor
Description TF Family: HSF
Location Contig416: 44962-46745
Sequence    

Annotation

kegg
ID rcu:RCOM_1252030
description Heat shock factor protein, putative
nr
ID XP_002522270.1
description Heat shock factor protein, putative [Ricinus communis]
swissprot
ID O49403
description Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1
trembl
ID B9S8F1
description Heat shock factor protein, putative OS=Ricinus communis GN=RCOM_1252030 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor a-4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41141: 46224-46776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000416_040 0.0 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
2 Hb_002740_030 0.0529370491 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
3 Hb_000563_320 0.0645579957 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
4 Hb_001142_030 0.0655138266 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
5 Hb_002863_050 0.0662427059 - - aldose 1-epimerase, putative [Ricinus communis]
6 Hb_001163_050 0.0665295933 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
7 Hb_036790_100 0.0679147304 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
8 Hb_000373_070 0.0682626976 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
9 Hb_001242_060 0.0711586869 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
10 Hb_007691_030 0.0724000313 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
11 Hb_002235_250 0.0737006444 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
12 Hb_011995_010 0.0738555187 - - dc50, putative [Ricinus communis]
13 Hb_000093_160 0.0759120223 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
14 Hb_017358_030 0.0760279876 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
15 Hb_005496_140 0.0762070966 - - conserved hypothetical protein [Ricinus communis]
16 Hb_120410_010 0.076429544 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
17 Hb_002256_030 0.0768335169 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007075_040 0.0770217281 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
19 Hb_000403_050 0.0773617002 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
20 Hb_003125_120 0.0785921456 - - PREDICTED: TITAN-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000416_040 Hb_000416_040 Hb_002740_030 Hb_002740_030 Hb_000416_040--Hb_002740_030 Hb_000563_320 Hb_000563_320 Hb_000416_040--Hb_000563_320 Hb_001142_030 Hb_001142_030 Hb_000416_040--Hb_001142_030 Hb_002863_050 Hb_002863_050 Hb_000416_040--Hb_002863_050 Hb_001163_050 Hb_001163_050 Hb_000416_040--Hb_001163_050 Hb_036790_100 Hb_036790_100 Hb_000416_040--Hb_036790_100 Hb_002740_030--Hb_001142_030 Hb_120410_010 Hb_120410_010 Hb_002740_030--Hb_120410_010 Hb_000220_010 Hb_000220_010 Hb_002740_030--Hb_000220_010 Hb_008453_140 Hb_008453_140 Hb_002740_030--Hb_008453_140 Hb_002740_030--Hb_001163_050 Hb_000016_250 Hb_000016_250 Hb_000563_320--Hb_000016_250 Hb_001157_040 Hb_001157_040 Hb_000563_320--Hb_001157_040 Hb_031527_040 Hb_031527_040 Hb_000563_320--Hb_031527_040 Hb_005779_060 Hb_005779_060 Hb_000563_320--Hb_005779_060 Hb_001242_060 Hb_001242_060 Hb_000563_320--Hb_001242_060 Hb_011995_010 Hb_011995_010 Hb_000563_320--Hb_011995_010 Hb_003125_120 Hb_003125_120 Hb_001142_030--Hb_003125_120 Hb_001142_030--Hb_008453_140 Hb_001142_030--Hb_001163_050 Hb_000580_180 Hb_000580_180 Hb_001142_030--Hb_000580_180 Hb_001142_030--Hb_120410_010 Hb_005496_140 Hb_005496_140 Hb_002863_050--Hb_005496_140 Hb_002863_050--Hb_000580_180 Hb_005144_160 Hb_005144_160 Hb_002863_050--Hb_005144_160 Hb_002863_050--Hb_001142_030 Hb_003416_010 Hb_003416_010 Hb_002863_050--Hb_003416_010 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_001163_050--Hb_003125_120 Hb_000373_070 Hb_000373_070 Hb_001163_050--Hb_000373_070 Hb_003001_080 Hb_003001_080 Hb_001163_050--Hb_003001_080 Hb_001163_050--Hb_008453_140 Hb_001595_030 Hb_001595_030 Hb_036790_100--Hb_001595_030 Hb_000403_050 Hb_000403_050 Hb_036790_100--Hb_000403_050 Hb_036790_100--Hb_001242_060 Hb_002256_030 Hb_002256_030 Hb_036790_100--Hb_002256_030 Hb_001258_090 Hb_001258_090 Hb_036790_100--Hb_001258_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8758 7.47765 8.09214 7.618 8.38839 11.3046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.68836 14.069 10.2682 4.53168 6.77114

CAGE analysis