Hb_000416_050

Information

Type transcription factor
Description TF Family: BES1
Location Contig416: 58214-62442
Sequence    

Annotation

kegg
ID rcu:RCOM_1252040
description BRASSINAZOLE-RESISTANT 2 protein, putative
nr
ID XP_002522271.1
description BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
swissprot
ID Q9ZV88
description BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1
trembl
ID B9S8F2
description BRASSINAZOLE-RESISTANT 2 protein, putative OS=Ricinus communis GN=RCOM_1252040 PE=4 SV=1
Gene Ontology
ID GO:0006355
description bes1 bzr1 homolog protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41142: 58662-62609 , PASA_asmbl_41143: 59648-60090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000416_050 0.0 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
2 Hb_000189_330 0.086108078 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
3 Hb_000270_460 0.0945145638 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
4 Hb_001418_040 0.102968414 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
5 Hb_001143_180 0.1048665155 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
6 Hb_000868_060 0.1080106399 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
7 Hb_001807_010 0.1086655492 - - hypothetical protein MTR_6g077630 [Medicago truncatula]
8 Hb_000395_020 0.1089820511 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
9 Hb_001050_010 0.1119041358 - - Advillin [Gossypium arboreum]
10 Hb_002946_160 0.1121734128 - - PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]
11 Hb_001377_320 0.112570161 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
12 Hb_001102_080 0.1125892817 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
13 Hb_002942_050 0.1127481104 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
14 Hb_000777_050 0.1137674192 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
15 Hb_001621_170 0.1145769347 - - protein binding protein, putative [Ricinus communis]
16 Hb_002928_010 0.1146326308 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
17 Hb_000445_050 0.1149985095 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
18 Hb_001105_010 0.1151877911 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
19 Hb_003858_040 0.1156773332 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
20 Hb_007919_080 0.1160219801 - - PREDICTED: uncharacterized protein At1g76660 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000416_050 Hb_000416_050 Hb_000189_330 Hb_000189_330 Hb_000416_050--Hb_000189_330 Hb_000270_460 Hb_000270_460 Hb_000416_050--Hb_000270_460 Hb_001418_040 Hb_001418_040 Hb_000416_050--Hb_001418_040 Hb_001143_180 Hb_001143_180 Hb_000416_050--Hb_001143_180 Hb_000868_060 Hb_000868_060 Hb_000416_050--Hb_000868_060 Hb_001807_010 Hb_001807_010 Hb_000416_050--Hb_001807_010 Hb_001621_170 Hb_001621_170 Hb_000189_330--Hb_001621_170 Hb_003813_040 Hb_003813_040 Hb_000189_330--Hb_003813_040 Hb_001377_320 Hb_001377_320 Hb_000189_330--Hb_001377_320 Hb_000189_330--Hb_001418_040 Hb_000189_330--Hb_001143_180 Hb_000395_020 Hb_000395_020 Hb_000189_330--Hb_000395_020 Hb_007982_070 Hb_007982_070 Hb_000270_460--Hb_007982_070 Hb_001102_080 Hb_001102_080 Hb_000270_460--Hb_001102_080 Hb_000300_360 Hb_000300_360 Hb_000270_460--Hb_000300_360 Hb_000270_460--Hb_001143_180 Hb_002045_150 Hb_002045_150 Hb_000270_460--Hb_002045_150 Hb_007558_120 Hb_007558_120 Hb_000270_460--Hb_007558_120 Hb_008556_030 Hb_008556_030 Hb_001418_040--Hb_008556_030 Hb_006960_050 Hb_006960_050 Hb_001418_040--Hb_006960_050 Hb_000576_050 Hb_000576_050 Hb_001418_040--Hb_000576_050 Hb_000101_380 Hb_000101_380 Hb_001418_040--Hb_000101_380 Hb_000414_050 Hb_000414_050 Hb_001418_040--Hb_000414_050 Hb_002836_140 Hb_002836_140 Hb_001418_040--Hb_002836_140 Hb_003878_110 Hb_003878_110 Hb_001143_180--Hb_003878_110 Hb_000291_060 Hb_000291_060 Hb_001143_180--Hb_000291_060 Hb_033834_030 Hb_033834_030 Hb_001143_180--Hb_033834_030 Hb_006816_050 Hb_006816_050 Hb_001143_180--Hb_006816_050 Hb_183612_040 Hb_183612_040 Hb_001143_180--Hb_183612_040 Hb_005337_090 Hb_005337_090 Hb_001143_180--Hb_005337_090 Hb_002888_070 Hb_002888_070 Hb_000868_060--Hb_002888_070 Hb_000868_060--Hb_000395_020 Hb_001050_010 Hb_001050_010 Hb_000868_060--Hb_001050_010 Hb_000868_060--Hb_001102_080 Hb_001085_320 Hb_001085_320 Hb_000868_060--Hb_001085_320 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_002928_010 Hb_002928_010 Hb_001807_010--Hb_002928_010 Hb_001269_200 Hb_001269_200 Hb_001807_010--Hb_001269_200 Hb_000139_190 Hb_000139_190 Hb_001807_010--Hb_000139_190 Hb_039605_010 Hb_039605_010 Hb_001807_010--Hb_039605_010 Hb_004631_190 Hb_004631_190 Hb_001807_010--Hb_004631_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.5004 14.2086 28.396 19.0622 19.7684 24.7108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2538 9.53323 10.3095 15.4338 7.24511

CAGE analysis