Hb_000416_060

Information

Type -
Description -
Location Contig416: 63939-68235
Sequence    

Annotation

kegg
ID rcu:RCOM_1252050
description zinc ion binding protein, putative
nr
ID XP_012091845.1
description PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
swissprot
ID Q9URW6
description SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1
trembl
ID A0A067JEF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21619 PE=4 SV=1
Gene Ontology
ID GO:0046872
description sh3 domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41144: 64040-65778 , PASA_asmbl_41145: 67702-67945 , PASA_asmbl_41146: 65818-68082 , PASA_asmbl_41148: 69026-69497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000416_060 0.0 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
2 Hb_005588_120 0.0833174017 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001699_170 0.088197582 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000800_010 0.0893444465 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
5 Hb_019654_110 0.0984226173 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
6 Hb_001404_090 0.106626092 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
7 Hb_132840_030 0.1131848351 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
8 Hb_004129_010 0.1157048029 - - aspartate aminotransferase, putative [Ricinus communis]
9 Hb_031089_050 0.1171859013 - - kinase, putative [Ricinus communis]
10 Hb_000157_140 0.1184167055 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_011174_080 0.1189995516 - - PREDICTED: sulfite oxidase [Jatropha curcas]
12 Hb_001969_130 0.1204608139 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
13 Hb_001235_130 0.1243628596 - - -
14 Hb_003581_130 0.1274932707 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_007229_050 0.1304197196 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
16 Hb_004943_040 0.1311936022 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
17 Hb_002968_030 0.1317278218 - - Pectinesterase-1 precursor, putative [Ricinus communis]
18 Hb_000256_160 0.1335401286 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
19 Hb_001124_140 0.1340438502 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
20 Hb_001059_060 0.1350390101 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_000416_060 Hb_000416_060 Hb_005588_120 Hb_005588_120 Hb_000416_060--Hb_005588_120 Hb_001699_170 Hb_001699_170 Hb_000416_060--Hb_001699_170 Hb_000800_010 Hb_000800_010 Hb_000416_060--Hb_000800_010 Hb_019654_110 Hb_019654_110 Hb_000416_060--Hb_019654_110 Hb_001404_090 Hb_001404_090 Hb_000416_060--Hb_001404_090 Hb_132840_030 Hb_132840_030 Hb_000416_060--Hb_132840_030 Hb_004129_010 Hb_004129_010 Hb_005588_120--Hb_004129_010 Hb_005588_120--Hb_132840_030 Hb_000256_160 Hb_000256_160 Hb_005588_120--Hb_000256_160 Hb_001235_130 Hb_001235_130 Hb_005588_120--Hb_001235_130 Hb_000340_220 Hb_000340_220 Hb_005588_120--Hb_000340_220 Hb_002046_060 Hb_002046_060 Hb_001699_170--Hb_002046_060 Hb_031089_050 Hb_031089_050 Hb_001699_170--Hb_031089_050 Hb_001699_170--Hb_005588_120 Hb_003581_130 Hb_003581_130 Hb_001699_170--Hb_003581_130 Hb_004030_060 Hb_004030_060 Hb_001699_170--Hb_004030_060 Hb_000800_010--Hb_005588_120 Hb_006414_010 Hb_006414_010 Hb_000800_010--Hb_006414_010 Hb_000800_010--Hb_004129_010 Hb_000800_010--Hb_001699_170 Hb_000800_010--Hb_132840_030 Hb_029584_100 Hb_029584_100 Hb_019654_110--Hb_029584_100 Hb_003006_080 Hb_003006_080 Hb_019654_110--Hb_003006_080 Hb_002151_100 Hb_002151_100 Hb_019654_110--Hb_002151_100 Hb_019654_110--Hb_005588_120 Hb_019654_110--Hb_001235_130 Hb_000094_150 Hb_000094_150 Hb_001404_090--Hb_000094_150 Hb_001404_090--Hb_132840_030 Hb_001404_090--Hb_005588_120 Hb_001307_200 Hb_001307_200 Hb_001404_090--Hb_001307_200 Hb_073973_020 Hb_073973_020 Hb_001404_090--Hb_073973_020 Hb_006949_060 Hb_006949_060 Hb_132840_030--Hb_006949_060 Hb_001514_240 Hb_001514_240 Hb_132840_030--Hb_001514_240 Hb_026698_020 Hb_026698_020 Hb_132840_030--Hb_026698_020 Hb_000227_320 Hb_000227_320 Hb_132840_030--Hb_000227_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.856828 10.6448 5.77639 11.0653 0.744069 1.73421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.38389 2.73281 1.35217 6.85909 12.4347

CAGE analysis