Hb_000416_080

Information

Type -
Description -
Location Contig416: 71743-72630
Sequence    

Annotation

kegg
ID rcu:RCOM_1252060
description Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002522273.1
description Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, putative [Ricinus communis]
swissprot
ID P58465
description CTD small phosphatase-like protein OS=Mus musculus GN=Ctdspl PE=2 SV=3
trembl
ID B9S8F4
description Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, putative OS=Ricinus communis GN=RCOM_1252060 PE=4 SV=1
Gene Ontology
ID GO:0004721
description carboxy-terminal domain rna polymerase ii polypeptide a small phosphatase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000416_080 0.0 - - Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, putative [Ricinus communis]
2 Hb_001969_120 0.0903121101 - - PREDICTED: plectin [Jatropha curcas]
3 Hb_000002_430 0.0938159618 - - PREDICTED: FHA domain-containing protein At4g14490 [Populus euphratica]
4 Hb_000340_550 0.0962857242 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
5 Hb_003776_050 0.097601906 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
6 Hb_005618_070 0.0992201821 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
7 Hb_011849_010 0.1041613088 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
8 Hb_007245_030 0.1046110063 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001279_110 0.1051356841 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
10 Hb_001541_140 0.1056090007 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
11 Hb_001168_030 0.1056328801 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
12 Hb_004635_020 0.1060051217 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
13 Hb_000069_510 0.1061929766 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
14 Hb_001864_040 0.1069379377 - - PREDICTED: kinesin-1 [Jatropha curcas]
15 Hb_000060_030 0.1071220099 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
16 Hb_012395_040 0.1074506992 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000316_070 0.1075058433 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
18 Hb_000614_200 0.1081000231 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
19 Hb_001998_180 0.109491256 - - actin binding protein, putative [Ricinus communis]
20 Hb_080952_060 0.1098767772 - - PREDICTED: patellin-4 [Populus euphratica]

Gene co-expression network

sample Hb_000416_080 Hb_000416_080 Hb_001969_120 Hb_001969_120 Hb_000416_080--Hb_001969_120 Hb_000002_430 Hb_000002_430 Hb_000416_080--Hb_000002_430 Hb_000340_550 Hb_000340_550 Hb_000416_080--Hb_000340_550 Hb_003776_050 Hb_003776_050 Hb_000416_080--Hb_003776_050 Hb_005618_070 Hb_005618_070 Hb_000416_080--Hb_005618_070 Hb_011849_010 Hb_011849_010 Hb_000416_080--Hb_011849_010 Hb_001969_120--Hb_003776_050 Hb_001969_120--Hb_005618_070 Hb_003398_050 Hb_003398_050 Hb_001969_120--Hb_003398_050 Hb_001279_110 Hb_001279_110 Hb_001969_120--Hb_001279_110 Hb_119044_040 Hb_119044_040 Hb_001969_120--Hb_119044_040 Hb_002928_150 Hb_002928_150 Hb_001969_120--Hb_002928_150 Hb_001864_040 Hb_001864_040 Hb_000002_430--Hb_001864_040 Hb_000265_100 Hb_000265_100 Hb_000002_430--Hb_000265_100 Hb_004635_020 Hb_004635_020 Hb_000002_430--Hb_004635_020 Hb_003935_090 Hb_003935_090 Hb_000002_430--Hb_003935_090 Hb_033152_060 Hb_033152_060 Hb_000002_430--Hb_033152_060 Hb_003777_260 Hb_003777_260 Hb_000340_550--Hb_003777_260 Hb_001439_240 Hb_001439_240 Hb_000340_550--Hb_001439_240 Hb_181744_010 Hb_181744_010 Hb_000340_550--Hb_181744_010 Hb_005288_090 Hb_005288_090 Hb_000340_550--Hb_005288_090 Hb_002053_100 Hb_002053_100 Hb_000340_550--Hb_002053_100 Hb_005116_120 Hb_005116_120 Hb_000340_550--Hb_005116_120 Hb_003776_050--Hb_119044_040 Hb_003776_050--Hb_003398_050 Hb_000614_200 Hb_000614_200 Hb_003776_050--Hb_000614_200 Hb_003776_050--Hb_002928_150 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030 Hb_012395_040 Hb_012395_040 Hb_005618_070--Hb_012395_040 Hb_005618_070--Hb_001279_110 Hb_005618_070--Hb_002928_150 Hb_001541_140 Hb_001541_140 Hb_005618_070--Hb_001541_140 Hb_005618_070--Hb_005288_090 Hb_011849_010--Hb_000614_200 Hb_011849_010--Hb_003776_050 Hb_002374_090 Hb_002374_090 Hb_011849_010--Hb_002374_090 Hb_000038_070 Hb_000038_070 Hb_011849_010--Hb_000038_070 Hb_011849_010--Hb_119044_040 Hb_000316_070 Hb_000316_070 Hb_011849_010--Hb_000316_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0643116 0.0643324 3.46714 1.44989 0 0.0592378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.186831 0.281596

CAGE analysis