Hb_000416_090

Information

Type -
Description -
Location Contig416: 80076-82359
Sequence    

Annotation

kegg
ID rcu:RCOM_1252070
description Aquaporin NIP1.1, putative
nr
ID XP_002522274.1
description Aquaporin NIP1.1, putative [Ricinus communis]
swissprot
ID Q8LFP7
description Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=2 SV=2
trembl
ID B9S8F5
description Aquaporin NIP1.1, putative OS=Ricinus communis GN=RCOM_1252070 PE=3 SV=1
Gene Ontology
ID GO:0016021
description aquaporin nip1-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41150: 80122-82355 , PASA_asmbl_41151: 80135-82214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000416_090 0.0 - - Aquaporin NIP1.1, putative [Ricinus communis]
2 Hb_004116_050 0.0863725846 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
3 Hb_001405_040 0.0934085782 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
4 Hb_029639_030 0.1002350339 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
5 Hb_000181_220 0.1040491402 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
6 Hb_019570_010 0.1040869297 - - lyase, putative [Ricinus communis]
7 Hb_000318_010 0.1053616972 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
8 Hb_001278_090 0.1104241834 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
9 Hb_000008_150 0.11132579 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
10 Hb_004855_080 0.1126829172 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
11 Hb_002890_200 0.1135414124 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
12 Hb_000152_120 0.1147898762 - - alpha-l-fucosidase, putative [Ricinus communis]
13 Hb_001244_070 0.1163666433 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
14 Hb_003506_010 0.1169721938 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
15 Hb_002635_020 0.1185735156 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
16 Hb_001488_420 0.1199162134 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
17 Hb_002724_010 0.1211029266 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
18 Hb_020805_070 0.1212015765 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
19 Hb_007101_140 0.1212882825 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
20 Hb_000162_200 0.1222986581 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000416_090 Hb_000416_090 Hb_004116_050 Hb_004116_050 Hb_000416_090--Hb_004116_050 Hb_001405_040 Hb_001405_040 Hb_000416_090--Hb_001405_040 Hb_029639_030 Hb_029639_030 Hb_000416_090--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_000416_090--Hb_000181_220 Hb_019570_010 Hb_019570_010 Hb_000416_090--Hb_019570_010 Hb_000318_010 Hb_000318_010 Hb_000416_090--Hb_000318_010 Hb_004116_050--Hb_001405_040 Hb_067558_010 Hb_067558_010 Hb_004116_050--Hb_067558_010 Hb_001244_070 Hb_001244_070 Hb_004116_050--Hb_001244_070 Hb_004855_080 Hb_004855_080 Hb_004116_050--Hb_004855_080 Hb_005181_190 Hb_005181_190 Hb_004116_050--Hb_005181_190 Hb_020805_070 Hb_020805_070 Hb_001405_040--Hb_020805_070 Hb_001405_040--Hb_004855_080 Hb_000008_150 Hb_000008_150 Hb_001405_040--Hb_000008_150 Hb_003506_010 Hb_003506_010 Hb_001405_040--Hb_003506_010 Hb_005892_040 Hb_005892_040 Hb_001405_040--Hb_005892_040 Hb_029639_030--Hb_000181_220 Hb_000152_880 Hb_000152_880 Hb_029639_030--Hb_000152_880 Hb_033772_060 Hb_033772_060 Hb_029639_030--Hb_033772_060 Hb_007894_080 Hb_007894_080 Hb_029639_030--Hb_007894_080 Hb_029639_030--Hb_005892_040 Hb_000977_030 Hb_000977_030 Hb_029639_030--Hb_000977_030 Hb_000181_220--Hb_033772_060 Hb_007101_140 Hb_007101_140 Hb_000181_220--Hb_007101_140 Hb_000181_220--Hb_007894_080 Hb_001488_350 Hb_001488_350 Hb_000181_220--Hb_001488_350 Hb_000181_220--Hb_001405_040 Hb_000732_220 Hb_000732_220 Hb_019570_010--Hb_000732_220 Hb_004592_010 Hb_004592_010 Hb_019570_010--Hb_004592_010 Hb_001104_020 Hb_001104_020 Hb_019570_010--Hb_001104_020 Hb_002805_180 Hb_002805_180 Hb_019570_010--Hb_002805_180 Hb_019570_010--Hb_000008_150 Hb_005144_060 Hb_005144_060 Hb_019570_010--Hb_005144_060 Hb_000162_200 Hb_000162_200 Hb_000318_010--Hb_000162_200 Hb_002724_010 Hb_002724_010 Hb_000318_010--Hb_002724_010 Hb_000703_120 Hb_000703_120 Hb_000318_010--Hb_000703_120 Hb_001417_060 Hb_001417_060 Hb_000318_010--Hb_001417_060 Hb_000977_020 Hb_000977_020 Hb_000318_010--Hb_000977_020 Hb_000318_010--Hb_000977_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.426 2.87314 23.4268 20.2526 0.250655 0.420578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0803398 0.189591 0.117613 11.5044 24.8615

CAGE analysis