Hb_000416_190

Information

Type -
Description -
Location Contig416: 206653-220611
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41159: 219443-219960 , PASA_asmbl_41161: 221066-221731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000416_190 0.0 - - -
2 Hb_000009_420 0.1169698844 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
3 Hb_004306_130 0.1214015431 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
4 Hb_010868_040 0.1277430893 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
5 Hb_002095_050 0.130382008 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
6 Hb_003398_040 0.136830921 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
7 Hb_000120_300 0.137518625 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
8 Hb_000737_010 0.138957719 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
9 Hb_000926_040 0.1444449533 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
10 Hb_005582_030 0.1485255632 - - PREDICTED: protein N-lysine methyltransferase METTL21A-like [Jatropha curcas]
11 Hb_002085_090 0.1488920245 - - -
12 Hb_000866_040 0.1520864221 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
13 Hb_021346_050 0.1522250634 - - xylulose kinase, putative [Ricinus communis]
14 Hb_002432_050 0.1522596085 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
15 Hb_004855_020 0.1529658281 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
16 Hb_004102_080 0.1531620718 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
17 Hb_000940_030 0.154323429 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
18 Hb_000310_060 0.1558789286 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
19 Hb_005527_060 0.1564970795 - - malic enzyme, putative [Ricinus communis]
20 Hb_003915_020 0.1611339551 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000416_190 Hb_000416_190 Hb_000009_420 Hb_000009_420 Hb_000416_190--Hb_000009_420 Hb_004306_130 Hb_004306_130 Hb_000416_190--Hb_004306_130 Hb_010868_040 Hb_010868_040 Hb_000416_190--Hb_010868_040 Hb_002095_050 Hb_002095_050 Hb_000416_190--Hb_002095_050 Hb_003398_040 Hb_003398_040 Hb_000416_190--Hb_003398_040 Hb_000120_300 Hb_000120_300 Hb_000416_190--Hb_000120_300 Hb_000009_420--Hb_003398_040 Hb_000753_110 Hb_000753_110 Hb_000009_420--Hb_000753_110 Hb_000310_060 Hb_000310_060 Hb_000009_420--Hb_000310_060 Hb_000009_420--Hb_010868_040 Hb_003299_020 Hb_003299_020 Hb_000009_420--Hb_003299_020 Hb_000866_040 Hb_000866_040 Hb_004306_130--Hb_000866_040 Hb_001266_130 Hb_001266_130 Hb_004306_130--Hb_001266_130 Hb_004306_130--Hb_002095_050 Hb_002675_230 Hb_002675_230 Hb_004306_130--Hb_002675_230 Hb_005993_030 Hb_005993_030 Hb_004306_130--Hb_005993_030 Hb_004855_020 Hb_004855_020 Hb_010868_040--Hb_004855_020 Hb_000227_400 Hb_000227_400 Hb_010868_040--Hb_000227_400 Hb_000940_030 Hb_000940_030 Hb_010868_040--Hb_000940_030 Hb_000207_350 Hb_000207_350 Hb_010868_040--Hb_000207_350 Hb_000243_060 Hb_000243_060 Hb_010868_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_010868_040--Hb_010381_040 Hb_001776_130 Hb_001776_130 Hb_002095_050--Hb_001776_130 Hb_002095_050--Hb_005993_030 Hb_003687_040 Hb_003687_040 Hb_002095_050--Hb_003687_040 Hb_014361_170 Hb_014361_170 Hb_002095_050--Hb_014361_170 Hb_003398_040--Hb_000310_060 Hb_001587_040 Hb_001587_040 Hb_003398_040--Hb_001587_040 Hb_005527_060 Hb_005527_060 Hb_003398_040--Hb_005527_060 Hb_003398_040--Hb_010868_040 Hb_003398_040--Hb_000753_110 Hb_001123_310 Hb_001123_310 Hb_000120_300--Hb_001123_310 Hb_000483_080 Hb_000483_080 Hb_000120_300--Hb_000483_080 Hb_021346_050 Hb_021346_050 Hb_000120_300--Hb_021346_050 Hb_000120_300--Hb_000207_350 Hb_000088_240 Hb_000088_240 Hb_000120_300--Hb_000088_240 Hb_000120_300--Hb_010868_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0523933 0.541833 2.36722 0.881537 0.0799828 0.0913695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.14396 0.150972 0 0.924911 1.16175

CAGE analysis