Hb_000416_200

Information

Type transcription factor
Description TF Family: PHD
Location Contig416: 220958-230864
Sequence    

Annotation

kegg
ID rcu:RCOM_1460410
description Histone-lysine N-methyltransferase ATXR6, putative (EC:2.1.1.43)
nr
ID XP_012086084.1
description PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
swissprot
ID B9RU15
description Probable Histone-lysine N-methyltransferase ATXR5 OS=Ricinus communis GN=ATXR5 PE=1 SV=1
trembl
ID A0A067JQG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22238 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable histone-lysine n-methyltransferase atxr5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41161: 221066-221731 , PASA_asmbl_41163: 230566-231042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000416_200 0.0 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
2 Hb_001824_080 0.0868551733 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
3 Hb_004109_120 0.0885317863 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
4 Hb_007821_020 0.0889987612 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
5 Hb_000880_070 0.0912348123 - - gamma-tubulin complex component, putative [Ricinus communis]
6 Hb_001348_080 0.0977795512 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
7 Hb_000567_070 0.0981003514 - - autophagy protein, putative [Ricinus communis]
8 Hb_001604_120 0.0986844312 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
9 Hb_002498_140 0.1005160304 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
10 Hb_000853_440 0.1016052096 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
11 Hb_004109_260 0.1026927922 - - hypothetical protein JCGZ_06843 [Jatropha curcas]
12 Hb_010931_070 0.1034965864 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
13 Hb_006846_070 0.1054165375 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
14 Hb_000254_100 0.1098437543 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
15 Hb_000207_300 0.1108360126 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
16 Hb_001518_080 0.1113888216 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
17 Hb_171900_040 0.1141933034 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
18 Hb_000039_150 0.1143746771 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
19 Hb_002055_020 0.1149946365 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
20 Hb_041290_020 0.115823882 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000416_200 Hb_000416_200 Hb_001824_080 Hb_001824_080 Hb_000416_200--Hb_001824_080 Hb_004109_120 Hb_004109_120 Hb_000416_200--Hb_004109_120 Hb_007821_020 Hb_007821_020 Hb_000416_200--Hb_007821_020 Hb_000880_070 Hb_000880_070 Hb_000416_200--Hb_000880_070 Hb_001348_080 Hb_001348_080 Hb_000416_200--Hb_001348_080 Hb_000567_070 Hb_000567_070 Hb_000416_200--Hb_000567_070 Hb_001824_080--Hb_004109_120 Hb_000254_100 Hb_000254_100 Hb_001824_080--Hb_000254_100 Hb_004109_260 Hb_004109_260 Hb_001824_080--Hb_004109_260 Hb_000304_070 Hb_000304_070 Hb_001824_080--Hb_000304_070 Hb_004339_040 Hb_004339_040 Hb_001824_080--Hb_004339_040 Hb_001824_080--Hb_007821_020 Hb_000207_300 Hb_000207_300 Hb_004109_120--Hb_000207_300 Hb_004109_120--Hb_000254_100 Hb_000724_020 Hb_000724_020 Hb_004109_120--Hb_000724_020 Hb_001158_160 Hb_001158_160 Hb_004109_120--Hb_001158_160 Hb_004109_120--Hb_004339_040 Hb_007821_020--Hb_000567_070 Hb_007821_020--Hb_000254_100 Hb_003225_020 Hb_003225_020 Hb_007821_020--Hb_003225_020 Hb_000115_280 Hb_000115_280 Hb_007821_020--Hb_000115_280 Hb_031284_010 Hb_031284_010 Hb_007821_020--Hb_031284_010 Hb_003186_020 Hb_003186_020 Hb_007821_020--Hb_003186_020 Hb_000321_140 Hb_000321_140 Hb_000880_070--Hb_000321_140 Hb_000880_070--Hb_004339_040 Hb_004100_050 Hb_004100_050 Hb_000880_070--Hb_004100_050 Hb_002055_020 Hb_002055_020 Hb_000880_070--Hb_002055_020 Hb_000880_070--Hb_000254_100 Hb_000880_070--Hb_001824_080 Hb_028960_020 Hb_028960_020 Hb_001348_080--Hb_028960_020 Hb_012330_010 Hb_012330_010 Hb_001348_080--Hb_012330_010 Hb_012733_070 Hb_012733_070 Hb_001348_080--Hb_012733_070 Hb_006483_110 Hb_006483_110 Hb_001348_080--Hb_006483_110 Hb_002027_080 Hb_002027_080 Hb_001348_080--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_001348_080--Hb_001518_080 Hb_000390_230 Hb_000390_230 Hb_000567_070--Hb_000390_230 Hb_000567_070--Hb_000254_100 Hb_000567_070--Hb_003186_020 Hb_000567_070--Hb_006483_110 Hb_000567_070--Hb_000115_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42727 0.872178 3.85841 1.85175 2.0862 2.24359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00138 1.28887 2.18643 2.21285 2.94699

CAGE analysis