Hb_000417_040

Information

Type -
Description -
Location Contig417: 25836-29524
Sequence    

Annotation

kegg
ID pop:POPTR_0011s07260g
description POPTRDRAFT_568704; hypothetical protein
nr
ID XP_012091783.1
description PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
swissprot
ID Q9LXT4
description Plant cysteine oxidase 5 OS=Arabidopsis thaliana GN=PCO5 PE=1 SV=1
trembl
ID A0A067JNM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21575 PE=4 SV=1
Gene Ontology
ID GO:0047800
description 2-aminoethanethiol dioxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41214: 25893-30033 , PASA_asmbl_41215: 25893-30033 , PASA_asmbl_41216: 25893-29701 , PASA_asmbl_41217: 26335-30000 , PASA_asmbl_41218: 25893-29701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_040 0.0 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
2 Hb_000406_080 0.0521485202 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
3 Hb_003389_040 0.0600753293 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
4 Hb_005846_040 0.0675677426 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
5 Hb_000032_380 0.0708322395 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007101_300 0.0763964529 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
7 Hb_000032_270 0.0772331134 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
8 Hb_011344_210 0.0773464764 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
9 Hb_000705_210 0.0821593708 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
10 Hb_000030_030 0.0834471127 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
11 Hb_024071_020 0.0838385357 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
12 Hb_008226_060 0.0850572218 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
13 Hb_003787_010 0.0852796843 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
14 Hb_003108_020 0.0877099599 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
15 Hb_000329_110 0.0881942017 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
16 Hb_002375_070 0.0883057043 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000099_080 0.0883690214 - - kinesin light chain, putative [Ricinus communis]
18 Hb_000905_060 0.0885622985 - - protein with unknown function [Ricinus communis]
19 Hb_004738_100 0.0890710206 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
20 Hb_000580_180 0.0891017029 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000417_040 Hb_000417_040 Hb_000406_080 Hb_000406_080 Hb_000417_040--Hb_000406_080 Hb_003389_040 Hb_003389_040 Hb_000417_040--Hb_003389_040 Hb_005846_040 Hb_005846_040 Hb_000417_040--Hb_005846_040 Hb_000032_380 Hb_000032_380 Hb_000417_040--Hb_000032_380 Hb_007101_300 Hb_007101_300 Hb_000417_040--Hb_007101_300 Hb_000032_270 Hb_000032_270 Hb_000417_040--Hb_000032_270 Hb_000329_110 Hb_000329_110 Hb_000406_080--Hb_000329_110 Hb_001225_080 Hb_001225_080 Hb_000406_080--Hb_001225_080 Hb_001057_040 Hb_001057_040 Hb_000406_080--Hb_001057_040 Hb_000645_090 Hb_000645_090 Hb_000406_080--Hb_000645_090 Hb_181385_010 Hb_181385_010 Hb_000406_080--Hb_181385_010 Hb_008226_060 Hb_008226_060 Hb_003389_040--Hb_008226_060 Hb_003389_040--Hb_007101_300 Hb_003389_040--Hb_000032_380 Hb_000357_110 Hb_000357_110 Hb_003389_040--Hb_000357_110 Hb_156635_010 Hb_156635_010 Hb_003389_040--Hb_156635_010 Hb_003151_040 Hb_003151_040 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_005846_040--Hb_004116_190 Hb_000032_380--Hb_007101_300 Hb_001278_100 Hb_001278_100 Hb_000032_380--Hb_001278_100 Hb_005054_350 Hb_005054_350 Hb_000032_380--Hb_005054_350 Hb_000032_380--Hb_008226_060 Hb_007101_300--Hb_008226_060 Hb_007101_300--Hb_001225_080 Hb_005489_060 Hb_005489_060 Hb_007101_300--Hb_005489_060 Hb_000680_160 Hb_000680_160 Hb_000032_270--Hb_000680_160 Hb_003428_030 Hb_003428_030 Hb_000032_270--Hb_003428_030 Hb_003057_100 Hb_003057_100 Hb_000032_270--Hb_003057_100 Hb_000032_270--Hb_005846_040 Hb_001758_100 Hb_001758_100 Hb_000032_270--Hb_001758_100 Hb_007691_030 Hb_007691_030 Hb_000032_270--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4496 18.0014 11.4064 24.0505 16.6857 20.5449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3344 34.1817 22.6305 14.8897 8.15538

CAGE analysis