Hb_000417_050

Information

Type -
Description -
Location Contig417: 35111-44624
Sequence    

Annotation

kegg
ID rcu:RCOM_0381140
description receptor protein kinase, putative
nr
ID XP_012091787.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
swissprot
ID C0LGQ4
description Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1
trembl
ID A0A067JM81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21576 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase mrh1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41221: 34766-40273 , PASA_asmbl_41222: 41328-44076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_050 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
2 Hb_004994_330 0.1037680496 - - DNA binding protein, putative [Ricinus communis]
3 Hb_002078_390 0.1061286018 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
4 Hb_002662_110 0.1089949791 - - Kinesin heavy chain, putative [Ricinus communis]
5 Hb_001677_040 0.1105794636 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
6 Hb_000622_050 0.1121190962 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001357_050 0.1137200594 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
8 Hb_004696_010 0.1175401733 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
9 Hb_004531_170 0.1179482561 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
10 Hb_000322_030 0.1194551327 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
11 Hb_028008_040 0.1203355005 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002311_280 0.1205749827 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_000083_080 0.1216464653 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
14 Hb_001104_150 0.1225540599 - - PREDICTED: protein ROS1 [Jatropha curcas]
15 Hb_000076_030 0.1241775581 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
16 Hb_003125_210 0.1246562583 - - Phospholipase C 4 precursor, putative [Ricinus communis]
17 Hb_003580_050 0.1253210102 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
18 Hb_000012_330 0.1264201587 - - pollen specific protein sf21, putative [Ricinus communis]
19 Hb_005568_020 0.1276508992 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
20 Hb_000984_150 0.1288766345 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000417_050 Hb_000417_050 Hb_004994_330 Hb_004994_330 Hb_000417_050--Hb_004994_330 Hb_002078_390 Hb_002078_390 Hb_000417_050--Hb_002078_390 Hb_002662_110 Hb_002662_110 Hb_000417_050--Hb_002662_110 Hb_001677_040 Hb_001677_040 Hb_000417_050--Hb_001677_040 Hb_000622_050 Hb_000622_050 Hb_000417_050--Hb_000622_050 Hb_001357_050 Hb_001357_050 Hb_000417_050--Hb_001357_050 Hb_001180_010 Hb_001180_010 Hb_004994_330--Hb_001180_010 Hb_004994_330--Hb_002662_110 Hb_000465_410 Hb_000465_410 Hb_004994_330--Hb_000465_410 Hb_001544_050 Hb_001544_050 Hb_004994_330--Hb_001544_050 Hb_000207_350 Hb_000207_350 Hb_004994_330--Hb_000207_350 Hb_005568_020 Hb_005568_020 Hb_002078_390--Hb_005568_020 Hb_000465_020 Hb_000465_020 Hb_002078_390--Hb_000465_020 Hb_028008_040 Hb_028008_040 Hb_002078_390--Hb_028008_040 Hb_000243_060 Hb_000243_060 Hb_002078_390--Hb_000243_060 Hb_002311_280 Hb_002311_280 Hb_002078_390--Hb_002311_280 Hb_005276_070 Hb_005276_070 Hb_002662_110--Hb_005276_070 Hb_000612_090 Hb_000612_090 Hb_002662_110--Hb_000612_090 Hb_003416_020 Hb_003416_020 Hb_002662_110--Hb_003416_020 Hb_000679_080 Hb_000679_080 Hb_002662_110--Hb_000679_080 Hb_032631_030 Hb_032631_030 Hb_002662_110--Hb_032631_030 Hb_001195_660 Hb_001195_660 Hb_001677_040--Hb_001195_660 Hb_000333_030 Hb_000333_030 Hb_001677_040--Hb_000333_030 Hb_001677_040--Hb_002662_110 Hb_002675_080 Hb_002675_080 Hb_001677_040--Hb_002675_080 Hb_001053_020 Hb_001053_020 Hb_001677_040--Hb_001053_020 Hb_000012_330 Hb_000012_330 Hb_000622_050--Hb_000012_330 Hb_000976_400 Hb_000976_400 Hb_000622_050--Hb_000976_400 Hb_004220_010 Hb_004220_010 Hb_000622_050--Hb_004220_010 Hb_012098_160 Hb_012098_160 Hb_000622_050--Hb_012098_160 Hb_005725_240 Hb_005725_240 Hb_000622_050--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_000622_050--Hb_004531_170 Hb_004218_200 Hb_004218_200 Hb_001357_050--Hb_004218_200 Hb_064546_010 Hb_064546_010 Hb_001357_050--Hb_064546_010 Hb_003580_050 Hb_003580_050 Hb_001357_050--Hb_003580_050 Hb_004696_010 Hb_004696_010 Hb_001357_050--Hb_004696_010 Hb_001357_050--Hb_000012_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.475777 2.78182 9.99067 11.8784 0.239264 0.592719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.216823 0.284357 0.48767 1.42864 10.1497

CAGE analysis