Hb_000417_110

Information

Type -
Description -
Location Contig417: 83387-85051
Sequence    

Annotation

kegg
ID vvi:100267427
description uncharacterized LOC100267427
nr
ID XP_012091792.1
description PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A059AVB4
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00565 PE=4 SV=1
Gene Ontology
ID GO:0005680
description bonsai protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41230: 83483-84937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_110 0.0 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
2 Hb_000634_050 0.0598811678 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
3 Hb_001584_070 0.0602067822 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001951_110 0.0655446258 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
5 Hb_000798_030 0.065558584 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
6 Hb_003058_070 0.0735702596 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
7 Hb_003001_060 0.0749494022 - - wound-responsive family protein [Populus trichocarpa]
8 Hb_000483_160 0.0753949411 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
9 Hb_012515_010 0.0780960814 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
10 Hb_000928_240 0.0797079879 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
11 Hb_001454_330 0.0809807593 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
12 Hb_000190_060 0.081108274 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
13 Hb_000318_380 0.0821079964 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
14 Hb_000465_060 0.0839157839 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
15 Hb_000365_380 0.084838105 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001019_090 0.0858828725 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
17 Hb_005701_020 0.0872180517 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
18 Hb_002296_060 0.0872957222 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
19 Hb_002893_060 0.0877302068 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
20 Hb_011139_020 0.0877315051 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000417_110 Hb_000417_110 Hb_000634_050 Hb_000634_050 Hb_000417_110--Hb_000634_050 Hb_001584_070 Hb_001584_070 Hb_000417_110--Hb_001584_070 Hb_001951_110 Hb_001951_110 Hb_000417_110--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_000417_110--Hb_000798_030 Hb_003058_070 Hb_003058_070 Hb_000417_110--Hb_003058_070 Hb_003001_060 Hb_003001_060 Hb_000417_110--Hb_003001_060 Hb_000045_190 Hb_000045_190 Hb_000634_050--Hb_000045_190 Hb_000634_050--Hb_001584_070 Hb_002781_020 Hb_002781_020 Hb_000634_050--Hb_002781_020 Hb_000634_050--Hb_000798_030 Hb_000526_150 Hb_000526_150 Hb_000634_050--Hb_000526_150 Hb_000465_060 Hb_000465_060 Hb_001584_070--Hb_000465_060 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_001824_070 Hb_001824_070 Hb_001584_070--Hb_001824_070 Hb_012515_010 Hb_012515_010 Hb_001584_070--Hb_012515_010 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_001804_040 Hb_001804_040 Hb_001951_110--Hb_001804_040 Hb_000866_300 Hb_000866_300 Hb_001951_110--Hb_000866_300 Hb_004204_030 Hb_004204_030 Hb_001951_110--Hb_004204_030 Hb_000392_270 Hb_000392_270 Hb_001951_110--Hb_000392_270 Hb_002529_100 Hb_002529_100 Hb_001951_110--Hb_002529_100 Hb_070986_010 Hb_070986_010 Hb_000798_030--Hb_070986_010 Hb_000798_030--Hb_000045_190 Hb_007741_050 Hb_007741_050 Hb_000798_030--Hb_007741_050 Hb_004204_120 Hb_004204_120 Hb_000798_030--Hb_004204_120 Hb_003058_070--Hb_003001_060 Hb_002234_210 Hb_002234_210 Hb_003058_070--Hb_002234_210 Hb_000190_060 Hb_000190_060 Hb_003058_070--Hb_000190_060 Hb_003058_070--Hb_000365_380 Hb_003058_070--Hb_000798_030 Hb_003878_190 Hb_003878_190 Hb_003001_060--Hb_003878_190 Hb_011805_080 Hb_011805_080 Hb_003001_060--Hb_011805_080 Hb_002893_060 Hb_002893_060 Hb_003001_060--Hb_002893_060 Hb_001369_650 Hb_001369_650 Hb_003001_060--Hb_001369_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
99.2073 25.8669 29.5232 21.6306 103.19 114.199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
167.674 210.159 81.2835 35.5113 11.9106

CAGE analysis