Hb_000417_130

Information

Type -
Description -
Location Contig417: 94791-98591
Sequence    

Annotation

kegg
ID tcc:TCM_029674
description Transcriptional regulator family protein, putative isoform 1
nr
ID XP_012091797.1
description PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
swissprot
ID Q9UHR5
description SAP30-binding protein OS=Homo sapiens GN=SAP30BP PE=1 SV=1
trembl
ID A0A067JBG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21583 PE=4 SV=1
Gene Ontology
ID GO:0006355
description sap30-binding isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41233: 94980-98419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_130 0.0 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
2 Hb_123915_040 0.0385460885 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
3 Hb_001357_250 0.0527343076 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
4 Hb_001357_350 0.0544806767 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001268_240 0.0600375223 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
6 Hb_000035_470 0.0632535257 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
7 Hb_063716_100 0.0639687245 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
8 Hb_000575_040 0.0640159005 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
9 Hb_001021_150 0.0662060023 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
10 Hb_000816_250 0.0676335151 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
11 Hb_033642_090 0.067668522 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000640_170 0.0686365277 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
13 Hb_001599_040 0.0694768352 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
14 Hb_005269_070 0.0695016767 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
15 Hb_156279_020 0.0696543227 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
16 Hb_004254_090 0.0698575206 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
17 Hb_000905_110 0.0704055771 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
18 Hb_006831_140 0.0705189095 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
19 Hb_005144_090 0.0710378855 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
20 Hb_000589_120 0.0713841396 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]

Gene co-expression network

sample Hb_000417_130 Hb_000417_130 Hb_123915_040 Hb_123915_040 Hb_000417_130--Hb_123915_040 Hb_001357_250 Hb_001357_250 Hb_000417_130--Hb_001357_250 Hb_001357_350 Hb_001357_350 Hb_000417_130--Hb_001357_350 Hb_001268_240 Hb_001268_240 Hb_000417_130--Hb_001268_240 Hb_000035_470 Hb_000035_470 Hb_000417_130--Hb_000035_470 Hb_063716_100 Hb_063716_100 Hb_000417_130--Hb_063716_100 Hb_000317_470 Hb_000317_470 Hb_123915_040--Hb_000317_470 Hb_004254_090 Hb_004254_090 Hb_123915_040--Hb_004254_090 Hb_123915_040--Hb_001357_250 Hb_000905_110 Hb_000905_110 Hb_123915_040--Hb_000905_110 Hb_001021_150 Hb_001021_150 Hb_123915_040--Hb_001021_150 Hb_033642_090 Hb_033642_090 Hb_001357_250--Hb_033642_090 Hb_004410_030 Hb_004410_030 Hb_001357_250--Hb_004410_030 Hb_000907_110 Hb_000907_110 Hb_001357_250--Hb_000907_110 Hb_001357_250--Hb_063716_100 Hb_001142_030 Hb_001142_030 Hb_001357_350--Hb_001142_030 Hb_003964_070 Hb_003964_070 Hb_001357_350--Hb_003964_070 Hb_001357_350--Hb_001268_240 Hb_000883_020 Hb_000883_020 Hb_001357_350--Hb_000883_020 Hb_000215_110 Hb_000215_110 Hb_001357_350--Hb_000215_110 Hb_000640_170 Hb_000640_170 Hb_001268_240--Hb_000640_170 Hb_001318_280 Hb_001318_280 Hb_001268_240--Hb_001318_280 Hb_009898_050 Hb_009898_050 Hb_001268_240--Hb_009898_050 Hb_172632_100 Hb_172632_100 Hb_001268_240--Hb_172632_100 Hb_004319_080 Hb_004319_080 Hb_000035_470--Hb_004319_080 Hb_015807_050 Hb_015807_050 Hb_000035_470--Hb_015807_050 Hb_000035_470--Hb_001021_150 Hb_168978_030 Hb_168978_030 Hb_000035_470--Hb_168978_030 Hb_002073_190 Hb_002073_190 Hb_000035_470--Hb_002073_190 Hb_000976_140 Hb_000976_140 Hb_000035_470--Hb_000976_140 Hb_000351_120 Hb_000351_120 Hb_063716_100--Hb_000351_120 Hb_000345_380 Hb_000345_380 Hb_063716_100--Hb_000345_380 Hb_063716_100--Hb_168978_030 Hb_000617_180 Hb_000617_180 Hb_063716_100--Hb_000617_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.15891 5.78876 10.0305 7.64911 9.50171 9.09815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.69136 10.7588 8.00277 11.0667 7.45993

CAGE analysis