Hb_000417_140

Information

Type -
Description -
Location Contig417: 102301-106741
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05750g
description POPTRDRAFT_800442; xanthine/uracil permease family protein
nr
ID XP_012091799.1
description PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
swissprot
ID Q94C70
description Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana GN=NAT2 PE=2 SV=2
trembl
ID A0A067JEC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21584 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41235: 102515-106740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_140 0.0 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
2 Hb_001252_050 0.1105887849 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
3 Hb_006711_040 0.1155506506 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
4 Hb_000272_010 0.1157740757 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
5 Hb_008143_050 0.1168704544 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
6 Hb_024682_030 0.1188089238 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
7 Hb_000535_040 0.1243336522 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
8 Hb_000024_150 0.1288469133 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
9 Hb_001782_100 0.1295692538 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_005306_030 0.1298173765 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
11 Hb_013358_030 0.1298388238 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
12 Hb_009767_030 0.1318486364 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
13 Hb_000260_670 0.1334790063 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
14 Hb_129996_010 0.1343166669 - - hypothetical protein PRUPE_ppa013547mg [Prunus persica]
15 Hb_000592_100 0.1373638533 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
16 Hb_001366_380 0.1376874324 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
17 Hb_001776_070 0.1380860852 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
18 Hb_008143_060 0.1381270137 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
19 Hb_080147_070 0.1387375622 - - Rop5 [Hevea brasiliensis]
20 Hb_000696_250 0.1398209253 - - PREDICTED: patellin-6 [Jatropha curcas]

Gene co-expression network

sample Hb_000417_140 Hb_000417_140 Hb_001252_050 Hb_001252_050 Hb_000417_140--Hb_001252_050 Hb_006711_040 Hb_006711_040 Hb_000417_140--Hb_006711_040 Hb_000272_010 Hb_000272_010 Hb_000417_140--Hb_000272_010 Hb_008143_050 Hb_008143_050 Hb_000417_140--Hb_008143_050 Hb_024682_030 Hb_024682_030 Hb_000417_140--Hb_024682_030 Hb_000535_040 Hb_000535_040 Hb_000417_140--Hb_000535_040 Hb_000343_220 Hb_000343_220 Hb_001252_050--Hb_000343_220 Hb_001252_050--Hb_008143_050 Hb_000696_250 Hb_000696_250 Hb_001252_050--Hb_000696_250 Hb_001252_050--Hb_006711_040 Hb_008143_060 Hb_008143_060 Hb_001252_050--Hb_008143_060 Hb_006711_040--Hb_000343_220 Hb_000490_040 Hb_000490_040 Hb_006711_040--Hb_000490_040 Hb_006711_040--Hb_008143_060 Hb_001832_140 Hb_001832_140 Hb_006711_040--Hb_001832_140 Hb_006711_040--Hb_000272_010 Hb_001366_380 Hb_001366_380 Hb_000272_010--Hb_001366_380 Hb_000260_670 Hb_000260_670 Hb_000272_010--Hb_000260_670 Hb_080147_070 Hb_080147_070 Hb_000272_010--Hb_080147_070 Hb_000272_010--Hb_000535_040 Hb_000272_010--Hb_000343_220 Hb_008143_050--Hb_000535_040 Hb_005306_030 Hb_005306_030 Hb_008143_050--Hb_005306_030 Hb_008143_050--Hb_000272_010 Hb_008143_050--Hb_000260_670 Hb_003360_010 Hb_003360_010 Hb_024682_030--Hb_003360_010 Hb_000592_100 Hb_000592_100 Hb_024682_030--Hb_000592_100 Hb_000431_100 Hb_000431_100 Hb_024682_030--Hb_000431_100 Hb_001524_120 Hb_001524_120 Hb_024682_030--Hb_001524_120 Hb_000024_150 Hb_000024_150 Hb_024682_030--Hb_000024_150 Hb_001782_100 Hb_001782_100 Hb_024682_030--Hb_001782_100 Hb_000094_230 Hb_000094_230 Hb_000535_040--Hb_000094_230 Hb_000535_040--Hb_001782_100 Hb_001263_030 Hb_001263_030 Hb_000535_040--Hb_001263_030 Hb_000979_070 Hb_000979_070 Hb_000535_040--Hb_000979_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0883166 2.43817 17.4196 11.6055 0.47565 0.040934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0212595 0.0669116 0.0317662 9.29919 1.91196

CAGE analysis