Hb_000417_180

Information

Type -
Description -
Location Contig417: 135172-137293
Sequence    

Annotation

kegg
ID rcu:RCOM_1250160
description 60S ribosomal protein L11, putative
nr
ID XP_002522234.1
description 60S ribosomal protein L11, putative [Ricinus communis]
swissprot
ID P46287
description 60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1
trembl
ID B9S8B5
description 60S ribosomal protein L11, putative OS=Ricinus communis GN=RCOM_1250160 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41243: 131455-134432 , PASA_asmbl_41245: 135074-137151
cDNA
(Sanger)
(ID:Location)		 012_E04.ab1: 135074-137119 , 015_L11.ab1: 135074-137120 , 036_C20.ab1: 135074-137120 , 045_J20.ab1: 135075-137141

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_180 0.0 - - 60S ribosomal protein L11, putative [Ricinus communis]
2 Hb_000017_120 0.0757245979 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
3 Hb_010863_080 0.0774877505 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
4 Hb_000107_390 0.0790519121 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
5 Hb_005527_050 0.0828958971 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
6 Hb_003297_030 0.0847572545 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
7 Hb_007426_230 0.0869167289 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
8 Hb_007152_020 0.0892922488 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
9 Hb_012340_030 0.0900294183 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
10 Hb_004195_160 0.090300224 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
11 Hb_000221_220 0.0903143828 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
12 Hb_000155_190 0.0916552435 - - conserved hypothetical protein [Ricinus communis]
13 Hb_168918_020 0.0933049901 - - pectin acetylesterase, putative [Ricinus communis]
14 Hb_168707_030 0.0950212616 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
15 Hb_002631_050 0.0957015067 - - membrane associated ring finger 1,8, putative [Ricinus communis]
16 Hb_004884_220 0.0968824311 - - hypothetical protein 29 [Hevea brasiliensis]
17 Hb_005843_110 0.098807176 - - Caltractin, putative [Ricinus communis]
18 Hb_000000_080 0.0990777431 - - lipoate-protein ligase B, putative [Ricinus communis]
19 Hb_000977_080 0.099215131 - - type II inositol 5-phosphatase, putative [Ricinus communis]
20 Hb_002272_250 0.0994069689 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000417_180 Hb_000417_180 Hb_000017_120 Hb_000017_120 Hb_000417_180--Hb_000017_120 Hb_010863_080 Hb_010863_080 Hb_000417_180--Hb_010863_080 Hb_000107_390 Hb_000107_390 Hb_000417_180--Hb_000107_390 Hb_005527_050 Hb_005527_050 Hb_000417_180--Hb_005527_050 Hb_003297_030 Hb_003297_030 Hb_000417_180--Hb_003297_030 Hb_007426_230 Hb_007426_230 Hb_000417_180--Hb_007426_230 Hb_001006_170 Hb_001006_170 Hb_000017_120--Hb_001006_170 Hb_001030_120 Hb_001030_120 Hb_000017_120--Hb_001030_120 Hb_012340_030 Hb_012340_030 Hb_000017_120--Hb_012340_030 Hb_004223_130 Hb_004223_130 Hb_000017_120--Hb_004223_130 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_002272_250 Hb_002272_250 Hb_000017_120--Hb_002272_250 Hb_010863_080--Hb_003297_030 Hb_000155_190 Hb_000155_190 Hb_010863_080--Hb_000155_190 Hb_168707_030 Hb_168707_030 Hb_010863_080--Hb_168707_030 Hb_000179_210 Hb_000179_210 Hb_010863_080--Hb_000179_210 Hb_004195_160 Hb_004195_160 Hb_010863_080--Hb_004195_160 Hb_168918_020 Hb_168918_020 Hb_000107_390--Hb_168918_020 Hb_000538_020 Hb_000538_020 Hb_000107_390--Hb_000538_020 Hb_000107_390--Hb_012340_030 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_000107_390--Hb_000001_020 Hb_003728_020 Hb_003728_020 Hb_005527_050--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_005527_050--Hb_003453_020 Hb_005527_050--Hb_002272_250 Hb_005928_060 Hb_005928_060 Hb_005527_050--Hb_005928_060 Hb_000905_190 Hb_000905_190 Hb_005527_050--Hb_000905_190 Hb_150069_020 Hb_150069_020 Hb_005527_050--Hb_150069_020 Hb_003609_040 Hb_003609_040 Hb_003297_030--Hb_003609_040 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_098993_010 Hb_098993_010 Hb_003297_030--Hb_098993_010 Hb_003297_030--Hb_000179_210 Hb_000030_010 Hb_000030_010 Hb_003297_030--Hb_000030_010 Hb_007426_230--Hb_004195_160 Hb_002097_110 Hb_002097_110 Hb_007426_230--Hb_002097_110 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_007426_230--Hb_001030_120 Hb_015001_020 Hb_015001_020 Hb_007426_230--Hb_015001_020 Hb_000398_180 Hb_000398_180 Hb_007426_230--Hb_000398_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1576.77 404.323 357.182 258.237 1739.14 1270.97
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
929.497 1483.94 1343.96 450.104 155.247

CAGE analysis