Hb_000417_210

Information

Type -
Description -
Location Contig417: 146537-148596
Sequence    

Annotation

kegg
ID rcu:RCOM_1250190
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002522237.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q3UMG5
description Leucine-rich repeat and calponin homology domain-containing protein 2 OS=Mus musculus GN=Lrch2 PE=2 SV=2
trembl
ID B9S8B8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1250190 PE=4 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41247: 146142-147536 , PASA_asmbl_41248: 149246-150374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_210 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000364_090 0.0625219617 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
3 Hb_000903_040 0.0812391058 - - PREDICTED: pirin-like protein [Jatropha curcas]
4 Hb_138585_010 0.0835349743 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
5 Hb_000676_230 0.0836914031 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
6 Hb_004804_010 0.0923826999 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
7 Hb_012484_050 0.0925760935 - - PREDICTED: kinesin KP1 [Jatropha curcas]
8 Hb_004032_190 0.0929542595 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
9 Hb_006242_050 0.0932895626 - - Osmotin precursor, putative [Ricinus communis]
10 Hb_001541_130 0.0956698096 - - GDSL esterase/lipase [Morus notabilis]
11 Hb_000003_280 0.0974440147 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001512_130 0.0990116012 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
13 Hb_001159_230 0.1009641169 - - Kinesin heavy chain, putative [Ricinus communis]
14 Hb_012395_060 0.1047683124 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
15 Hb_015561_010 0.106694953 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005656_120 0.1070827646 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
17 Hb_006846_040 0.1086196397 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
18 Hb_009252_070 0.1089450801 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
19 Hb_143629_170 0.1091011434 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
20 Hb_001951_080 0.1094031275 - - O-acetyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000417_210 Hb_000417_210 Hb_000364_090 Hb_000364_090 Hb_000417_210--Hb_000364_090 Hb_000903_040 Hb_000903_040 Hb_000417_210--Hb_000903_040 Hb_138585_010 Hb_138585_010 Hb_000417_210--Hb_138585_010 Hb_000676_230 Hb_000676_230 Hb_000417_210--Hb_000676_230 Hb_004804_010 Hb_004804_010 Hb_000417_210--Hb_004804_010 Hb_012484_050 Hb_012484_050 Hb_000417_210--Hb_012484_050 Hb_004032_190 Hb_004032_190 Hb_000364_090--Hb_004032_190 Hb_000364_090--Hb_000676_230 Hb_133974_010 Hb_133974_010 Hb_000364_090--Hb_133974_010 Hb_001289_070 Hb_001289_070 Hb_000364_090--Hb_001289_070 Hb_005711_030 Hb_005711_030 Hb_000364_090--Hb_005711_030 Hb_053264_010 Hb_053264_010 Hb_000903_040--Hb_053264_010 Hb_000903_040--Hb_000676_230 Hb_006846_040 Hb_006846_040 Hb_000903_040--Hb_006846_040 Hb_000903_040--Hb_138585_010 Hb_009783_010 Hb_009783_010 Hb_000903_040--Hb_009783_010 Hb_138585_010--Hb_004804_010 Hb_138585_010--Hb_006846_040 Hb_001534_140 Hb_001534_140 Hb_138585_010--Hb_001534_140 Hb_009252_070 Hb_009252_070 Hb_138585_010--Hb_009252_070 Hb_004032_290 Hb_004032_290 Hb_000676_230--Hb_004032_290 Hb_010142_060 Hb_010142_060 Hb_000676_230--Hb_010142_060 Hb_000368_050 Hb_000368_050 Hb_000676_230--Hb_000368_050 Hb_000676_230--Hb_133974_010 Hb_004650_120 Hb_004650_120 Hb_000676_230--Hb_004650_120 Hb_027506_030 Hb_027506_030 Hb_004804_010--Hb_027506_030 Hb_085962_010 Hb_085962_010 Hb_004804_010--Hb_085962_010 Hb_012395_060 Hb_012395_060 Hb_004804_010--Hb_012395_060 Hb_010264_020 Hb_010264_020 Hb_004804_010--Hb_010264_020 Hb_169077_030 Hb_169077_030 Hb_004804_010--Hb_169077_030 Hb_001951_080 Hb_001951_080 Hb_012484_050--Hb_001951_080 Hb_007163_100 Hb_007163_100 Hb_012484_050--Hb_007163_100 Hb_012098_160 Hb_012098_160 Hb_012484_050--Hb_012098_160 Hb_001512_130 Hb_001512_130 Hb_012484_050--Hb_001512_130 Hb_000012_330 Hb_000012_330 Hb_012484_050--Hb_000012_330 Hb_001486_280 Hb_001486_280 Hb_012484_050--Hb_001486_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103816 2.8917 14.5458 37.3491 0.119601 0.0835087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0947782 0.0994188 0.0933578 3.39346 24.4804

CAGE analysis