Hb_000417_220

Information

Type -
Description -
Location Contig417: 149202-162597
Sequence    

Annotation

kegg
ID rcu:RCOM_1250300
description wd40 protein, putative (EC:2.4.1.12)
nr
ID XP_008446713.1
description PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
swissprot
ID Q8LPK5
description Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1
trembl
ID L0AST4
description Cellulose synthase OS=Populus tomentosa PE=3 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41248: 149246-150374 , PASA_asmbl_41249: 151091-151252 , PASA_asmbl_41251: 156713-156956 , PASA_asmbl_41252: 157668-160698 , PASA_asmbl_41253: 161149-162384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_220 0.0 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
2 Hb_001832_170 0.1048709868 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
3 Hb_000061_290 0.1538430566 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000130_350 0.1561503224 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_001959_100 0.1590665428 - - ammonium transporter, putative [Ricinus communis]
6 Hb_000251_120 0.1628838506 - - O-acetyltransferase, putative [Ricinus communis]
7 Hb_001001_070 0.1634267378 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
8 Hb_002081_020 0.1642838267 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
9 Hb_000552_010 0.1681367529 - - PREDICTED: fasciclin-like arabinogalactan protein 2 [Jatropha curcas]
10 Hb_000270_340 0.1686561048 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
11 Hb_000200_360 0.1693427804 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
12 Hb_001221_240 0.1709581517 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002400_300 0.1730880571 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
14 Hb_001141_250 0.1741370635 - - hypothetical protein glysoja_047929, partial [Glycine soja]
15 Hb_001195_380 0.174447272 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
16 Hb_012633_060 0.1749317113 - - laccase, putative [Ricinus communis]
17 Hb_000139_060 0.1760297808 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
18 Hb_006750_010 0.177344476 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
19 Hb_001235_120 0.1774511516 - - hypothetical protein JCGZ_03395 [Jatropha curcas]
20 Hb_001213_110 0.1776332162 - - SOUL heme-binding family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000417_220 Hb_000417_220 Hb_001832_170 Hb_001832_170 Hb_000417_220--Hb_001832_170 Hb_000061_290 Hb_000061_290 Hb_000417_220--Hb_000061_290 Hb_000130_350 Hb_000130_350 Hb_000417_220--Hb_000130_350 Hb_001959_100 Hb_001959_100 Hb_000417_220--Hb_001959_100 Hb_000251_120 Hb_000251_120 Hb_000417_220--Hb_000251_120 Hb_001001_070 Hb_001001_070 Hb_000417_220--Hb_001001_070 Hb_000005_370 Hb_000005_370 Hb_001832_170--Hb_000005_370 Hb_002400_300 Hb_002400_300 Hb_001832_170--Hb_002400_300 Hb_000552_010 Hb_000552_010 Hb_001832_170--Hb_000552_010 Hb_000270_340 Hb_000270_340 Hb_001832_170--Hb_000270_340 Hb_000139_060 Hb_000139_060 Hb_001832_170--Hb_000139_060 Hb_012633_060 Hb_012633_060 Hb_000061_290--Hb_012633_060 Hb_000690_170 Hb_000690_170 Hb_000061_290--Hb_000690_170 Hb_003913_010 Hb_003913_010 Hb_000061_290--Hb_003913_010 Hb_001276_050 Hb_001276_050 Hb_000061_290--Hb_001276_050 Hb_000061_290--Hb_000270_340 Hb_116701_010 Hb_116701_010 Hb_000130_350--Hb_116701_010 Hb_158092_050 Hb_158092_050 Hb_000130_350--Hb_158092_050 Hb_031284_060 Hb_031284_060 Hb_000130_350--Hb_031284_060 Hb_000173_240 Hb_000173_240 Hb_000130_350--Hb_000173_240 Hb_008762_010 Hb_008762_010 Hb_000130_350--Hb_008762_010 Hb_000428_040 Hb_000428_040 Hb_000130_350--Hb_000428_040 Hb_000340_240 Hb_000340_240 Hb_001959_100--Hb_000340_240 Hb_012760_120 Hb_012760_120 Hb_001959_100--Hb_012760_120 Hb_000200_360 Hb_000200_360 Hb_001959_100--Hb_000200_360 Hb_000538_110 Hb_000538_110 Hb_001959_100--Hb_000538_110 Hb_000227_100 Hb_000227_100 Hb_001959_100--Hb_000227_100 Hb_011214_080 Hb_011214_080 Hb_001959_100--Hb_011214_080 Hb_000251_120--Hb_001001_070 Hb_000108_180 Hb_000108_180 Hb_000251_120--Hb_000108_180 Hb_000392_540 Hb_000392_540 Hb_000251_120--Hb_000392_540 Hb_003177_040 Hb_003177_040 Hb_000251_120--Hb_003177_040 Hb_008461_060 Hb_008461_060 Hb_000251_120--Hb_008461_060 Hb_001195_380 Hb_001195_380 Hb_000251_120--Hb_001195_380 Hb_001001_070--Hb_008461_060 Hb_001001_070--Hb_000108_180 Hb_001001_070--Hb_003177_040 Hb_002081_020 Hb_002081_020 Hb_001001_070--Hb_002081_020 Hb_002759_030 Hb_002759_030 Hb_001001_070--Hb_002759_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.985828 4.46597 5.32643 51.3038 0.965296 2.42349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.64274 2.62326 1.56307 2.05761 65.5972

CAGE analysis