Hb_000417_230

Information

Type -
Description -
Location Contig417: 169794-170537
Sequence    

Annotation

kegg
ID rcu:RCOM_1250530
description hypothetical protein
nr
ID XP_002522240.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8C1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1250530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_094839_010 0.0597564172 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002107_080 0.0730938691 - - JHL20J20.3 [Jatropha curcas]
4 Hb_073973_180 0.0800821313 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
5 Hb_010573_030 0.0931953011 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003071_040 0.1119775414 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
7 Hb_004968_050 0.1133993157 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
8 Hb_007728_010 0.120168855 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
9 Hb_001213_140 0.1206371276 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
10 Hb_000134_010 0.122991818 - - -
11 Hb_004242_160 0.1248870711 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
12 Hb_000318_320 0.1258517679 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
13 Hb_165552_020 0.1289566927 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_003800_010 0.1296532062 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
15 Hb_087468_010 0.1301047214 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
16 Hb_098175_010 0.1301283395 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
17 Hb_005183_010 0.1308774959 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
18 Hb_001098_020 0.1314228173 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
19 Hb_000252_190 0.1319206872 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
20 Hb_043115_010 0.1322609703 - - hypothetical protein JCGZ_16710 [Jatropha curcas]

Gene co-expression network

sample Hb_000417_230 Hb_000417_230 Hb_094839_010 Hb_094839_010 Hb_000417_230--Hb_094839_010 Hb_002107_080 Hb_002107_080 Hb_000417_230--Hb_002107_080 Hb_073973_180 Hb_073973_180 Hb_000417_230--Hb_073973_180 Hb_010573_030 Hb_010573_030 Hb_000417_230--Hb_010573_030 Hb_003071_040 Hb_003071_040 Hb_000417_230--Hb_003071_040 Hb_004968_050 Hb_004968_050 Hb_000417_230--Hb_004968_050 Hb_094839_010--Hb_073973_180 Hb_094839_010--Hb_010573_030 Hb_000134_010 Hb_000134_010 Hb_094839_010--Hb_000134_010 Hb_094839_010--Hb_002107_080 Hb_007728_010 Hb_007728_010 Hb_094839_010--Hb_007728_010 Hb_002107_080--Hb_004968_050 Hb_002107_080--Hb_073973_180 Hb_000318_320 Hb_000318_320 Hb_002107_080--Hb_000318_320 Hb_002107_080--Hb_010573_030 Hb_161045_010 Hb_161045_010 Hb_073973_180--Hb_161045_010 Hb_001098_020 Hb_001098_020 Hb_073973_180--Hb_001098_020 Hb_073973_180--Hb_010573_030 Hb_010573_030--Hb_007728_010 Hb_002422_020 Hb_002422_020 Hb_010573_030--Hb_002422_020 Hb_137612_010 Hb_137612_010 Hb_010573_030--Hb_137612_010 Hb_013591_010 Hb_013591_010 Hb_010573_030--Hb_013591_010 Hb_010573_030--Hb_000134_010 Hb_003071_040--Hb_001098_020 Hb_098175_010 Hb_098175_010 Hb_003071_040--Hb_098175_010 Hb_000313_190 Hb_000313_190 Hb_003071_040--Hb_000313_190 Hb_000731_020 Hb_000731_020 Hb_003071_040--Hb_000731_020 Hb_003071_040--Hb_010573_030 Hb_000529_050 Hb_000529_050 Hb_003071_040--Hb_000529_050 Hb_000087_180 Hb_000087_180 Hb_004968_050--Hb_000087_180 Hb_004968_050--Hb_073973_180 Hb_005183_010 Hb_005183_010 Hb_004968_050--Hb_005183_010 Hb_004968_050--Hb_000318_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63739 440.178 43.8754 218.089 0.127554 0.456313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297585 0.701899 0.420243 3.96435 11.6516

CAGE analysis