Hb_000417_240

Information

Type -
Description -
Location Contig417: 199557-201159
Sequence    

Annotation

kegg
ID rcu:RCOM_1250590
description hypothetical protein
nr
ID XP_012091815.1
description PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JED4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21599 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41257: 200274-201148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_240 0.0 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
2 Hb_003995_040 0.0001401316 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
3 Hb_000173_070 0.0008206285 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
4 Hb_000307_080 0.0018124717 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000280_070 0.0037743492 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
6 Hb_000784_050 0.004299047 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
7 Hb_007975_070 0.0049456539 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
8 Hb_002151_140 0.0060295604 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
9 Hb_105767_030 0.0063499433 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003667_030 0.012773716 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
11 Hb_000489_050 0.0148651084 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
12 Hb_130862_010 0.0156086095 - - purine permease, putative [Ricinus communis]
13 Hb_090511_010 0.0178590959 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
14 Hb_012675_030 0.0181661549 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
15 Hb_000334_100 0.0183751173 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
16 Hb_000008_100 0.0219482414 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
17 Hb_000769_040 0.022950529 - - hypothetical protein VITISV_028082 [Vitis vinifera]
18 Hb_002391_280 0.0230298073 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
19 Hb_002817_020 0.0233991941 - - -
20 Hb_022862_010 0.0267424881 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000417_240 Hb_000417_240 Hb_003995_040 Hb_003995_040 Hb_000417_240--Hb_003995_040 Hb_000173_070 Hb_000173_070 Hb_000417_240--Hb_000173_070 Hb_000307_080 Hb_000307_080 Hb_000417_240--Hb_000307_080 Hb_000280_070 Hb_000280_070 Hb_000417_240--Hb_000280_070 Hb_000784_050 Hb_000784_050 Hb_000417_240--Hb_000784_050 Hb_007975_070 Hb_007975_070 Hb_000417_240--Hb_007975_070 Hb_003995_040--Hb_000173_070 Hb_003995_040--Hb_000307_080 Hb_003995_040--Hb_000280_070 Hb_003995_040--Hb_000784_050 Hb_003995_040--Hb_007975_070 Hb_000173_070--Hb_000307_080 Hb_000173_070--Hb_000280_070 Hb_000173_070--Hb_000784_050 Hb_002151_140 Hb_002151_140 Hb_000173_070--Hb_002151_140 Hb_000307_080--Hb_000280_070 Hb_000307_080--Hb_000784_050 Hb_000307_080--Hb_002151_140 Hb_000280_070--Hb_000784_050 Hb_000280_070--Hb_002151_140 Hb_000784_050--Hb_002151_140 Hb_105767_030 Hb_105767_030 Hb_007975_070--Hb_105767_030 Hb_007975_070--Hb_000173_070 Hb_007975_070--Hb_000307_080 Hb_007975_070--Hb_000280_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.25674 0.34205 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis