Hb_000417_260

Information

Type -
Description -
Location Contig417: 211671-217710
Sequence    

Annotation

kegg
ID rcu:RCOM_1250910
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002522248.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9FK68
description Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=2 SV=1
trembl
ID B9S8C9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1250910 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba1d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41259: 211683-217723
cDNA
(Sanger)
(ID:Location)		 023_K02.ab1: 212084-217618 , 036_M01.ab1: 212133-217723

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_260 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_005278_040 0.0570252417 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
3 Hb_001005_080 0.0652020587 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
4 Hb_000384_120 0.0686941531 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
5 Hb_004672_010 0.0719393111 - - ecotropic viral integration site, putative [Ricinus communis]
6 Hb_001008_090 0.0749510162 - - cytochrome C oxidase, putative [Ricinus communis]
7 Hb_001481_140 0.0759216687 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
8 Hb_068056_030 0.0773525677 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
9 Hb_005463_140 0.0794038918 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
10 Hb_114310_080 0.0819691411 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004659_060 0.082373939 - - RAS-related GTP-binding family protein [Populus trichocarpa]
12 Hb_001519_030 0.0870297797 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
13 Hb_006569_100 0.0874743278 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
14 Hb_000254_050 0.0903826619 - - hypothetical protein VITISV_010510 [Vitis vinifera]
15 Hb_027654_050 0.0905411309 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
16 Hb_002324_010 0.091781189 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
17 Hb_072922_020 0.091990473 - - SNARE-like superfamily protein [Theobroma cacao]
18 Hb_001512_080 0.0926949439 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
19 Hb_000056_250 0.0927043757 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
20 Hb_000896_040 0.0937010952 - - BnaC02g13240D [Brassica napus]

Gene co-expression network

sample Hb_000417_260 Hb_000417_260 Hb_005278_040 Hb_005278_040 Hb_000417_260--Hb_005278_040 Hb_001005_080 Hb_001005_080 Hb_000417_260--Hb_001005_080 Hb_000384_120 Hb_000384_120 Hb_000417_260--Hb_000384_120 Hb_004672_010 Hb_004672_010 Hb_000417_260--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_000417_260--Hb_001008_090 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140 Hb_005278_040--Hb_001008_090 Hb_002324_010 Hb_002324_010 Hb_005278_040--Hb_002324_010 Hb_005278_040--Hb_000384_120 Hb_000056_250 Hb_000056_250 Hb_005278_040--Hb_000056_250 Hb_138585_040 Hb_138585_040 Hb_005278_040--Hb_138585_040 Hb_001005_080--Hb_001481_140 Hb_001519_030 Hb_001519_030 Hb_001005_080--Hb_001519_030 Hb_007192_100 Hb_007192_100 Hb_001005_080--Hb_007192_100 Hb_152910_020 Hb_152910_020 Hb_001005_080--Hb_152910_020 Hb_005463_140 Hb_005463_140 Hb_001005_080--Hb_005463_140 Hb_072922_020 Hb_072922_020 Hb_000384_120--Hb_072922_020 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_000384_120--Hb_002324_010 Hb_005137_060 Hb_005137_060 Hb_004672_010--Hb_005137_060 Hb_000046_350 Hb_000046_350 Hb_004672_010--Hb_000046_350 Hb_008232_010 Hb_008232_010 Hb_004672_010--Hb_008232_010 Hb_000072_180 Hb_000072_180 Hb_004672_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_004672_010--Hb_027654_050 Hb_004659_060 Hb_004659_060 Hb_001008_090--Hb_004659_060 Hb_006569_100 Hb_006569_100 Hb_001008_090--Hb_006569_100 Hb_000300_220 Hb_000300_220 Hb_001008_090--Hb_000300_220 Hb_183961_010 Hb_183961_010 Hb_001008_090--Hb_183961_010 Hb_001481_140--Hb_001519_030 Hb_003462_120 Hb_003462_120 Hb_001481_140--Hb_003462_120 Hb_001481_140--Hb_004672_010 Hb_001481_140--Hb_001008_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6172 8.76282 19.1859 41.6943 11.0094 22.1909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.6608 85.7311 68.0566 33.9382 21.2677

CAGE analysis