Hb_000417_290

Information

Type -
Description -
Location Contig417: 233866-234171
Sequence    

Annotation

kegg
ID rcu:RCOM_1251150
description hypothetical protein
nr
ID XP_002522252.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8D3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1251150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41268: 233746-234491
cDNA
(Sanger)
(ID:Location)		 019_P17.ab1: 233746-234313 , 036_E15.ab1: 233746-234311

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_290 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000627_140 0.1436767069 - - ATP binding protein, putative [Ricinus communis]
3 Hb_004586_380 0.1457996738 - - purine transporter, putative [Ricinus communis]
4 Hb_045810_010 0.1485403386 - - PREDICTED: laccase-12-like [Jatropha curcas]
5 Hb_000532_060 0.1493697177 - - copper-transporting atpase p-type, putative [Ricinus communis]
6 Hb_001691_190 0.149391575 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006351_080 0.1521427225 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
8 Hb_029866_140 0.152187267 - - PREDICTED: hevamine-A [Jatropha curcas]
9 Hb_002217_440 0.1539054631 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_000170_230 0.1581515036 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
11 Hb_001376_020 0.1614140202 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
12 Hb_012055_100 0.1614765873 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
13 Hb_000333_130 0.161758718 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_001863_100 0.1652951726 - - conserved hypothetical protein [Ricinus communis]
15 Hb_176149_010 0.1659680696 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
16 Hb_000345_190 0.1663696203 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
17 Hb_000656_360 0.1664228936 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
18 Hb_000035_360 0.1668114014 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
19 Hb_000128_010 0.1684733438 - - dimethylaniline monooxygenase, putative [Ricinus communis]
20 Hb_001749_020 0.1715414436 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000417_290 Hb_000417_290 Hb_000627_140 Hb_000627_140 Hb_000417_290--Hb_000627_140 Hb_004586_380 Hb_004586_380 Hb_000417_290--Hb_004586_380 Hb_045810_010 Hb_045810_010 Hb_000417_290--Hb_045810_010 Hb_000532_060 Hb_000532_060 Hb_000417_290--Hb_000532_060 Hb_001691_190 Hb_001691_190 Hb_000417_290--Hb_001691_190 Hb_006351_080 Hb_006351_080 Hb_000417_290--Hb_006351_080 Hb_133646_010 Hb_133646_010 Hb_000627_140--Hb_133646_010 Hb_004161_010 Hb_004161_010 Hb_000627_140--Hb_004161_010 Hb_176149_010 Hb_176149_010 Hb_000627_140--Hb_176149_010 Hb_000336_160 Hb_000336_160 Hb_000627_140--Hb_000336_160 Hb_000656_360 Hb_000656_360 Hb_000627_140--Hb_000656_360 Hb_000627_140--Hb_004586_380 Hb_004586_380--Hb_006351_080 Hb_004586_380--Hb_176149_010 Hb_000128_010 Hb_000128_010 Hb_004586_380--Hb_000128_010 Hb_004098_010 Hb_004098_010 Hb_004586_380--Hb_004098_010 Hb_004586_380--Hb_000656_360 Hb_119441_010 Hb_119441_010 Hb_004586_380--Hb_119441_010 Hb_007785_020 Hb_007785_020 Hb_045810_010--Hb_007785_020 Hb_002067_110 Hb_002067_110 Hb_045810_010--Hb_002067_110 Hb_001331_050 Hb_001331_050 Hb_045810_010--Hb_001331_050 Hb_045810_010--Hb_006351_080 Hb_000844_020 Hb_000844_020 Hb_045810_010--Hb_000844_020 Hb_000233_060 Hb_000233_060 Hb_045810_010--Hb_000233_060 Hb_000345_190 Hb_000345_190 Hb_000532_060--Hb_000345_190 Hb_000170_230 Hb_000170_230 Hb_000532_060--Hb_000170_230 Hb_046117_050 Hb_046117_050 Hb_000532_060--Hb_046117_050 Hb_003376_340 Hb_003376_340 Hb_000532_060--Hb_003376_340 Hb_150643_010 Hb_150643_010 Hb_000532_060--Hb_150643_010 Hb_001487_020 Hb_001487_020 Hb_000532_060--Hb_001487_020 Hb_001691_190--Hb_000170_230 Hb_131591_010 Hb_131591_010 Hb_001691_190--Hb_131591_010 Hb_000270_010 Hb_000270_010 Hb_001691_190--Hb_000270_010 Hb_029866_140 Hb_029866_140 Hb_001691_190--Hb_029866_140 Hb_001691_190--Hb_004586_380 Hb_001691_190--Hb_133646_010 Hb_006351_080--Hb_176149_010 Hb_006351_080--Hb_000128_010 Hb_006351_080--Hb_001331_050 Hb_006351_080--Hb_119441_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 129.269 2.86802 12.6076 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.712501 3.08543 1.61189 28.8117 0

CAGE analysis