Hb_000417_310

Information

Type -
Description -
Location Contig417: 256973-260403
Sequence    

Annotation

kegg
ID csv:101228011
description probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like
nr
ID NP_001140472.1
description uncharacterized protein LOC100272531 [Zea mays]
swissprot
ID Q9T079
description Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 4 OS=Arabidopsis thaliana GN=TPS4 PE=3 SV=1
trembl
ID B4FP60
description Trehalose 6-phosphate phosphatase OS=Zea mays PE=2 SV=1
Gene Ontology
ID GO:0003825
description probable -trehalose-phosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41273: 256453-256580 , PASA_asmbl_41275: 260034-260234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_310 0.0 - - uncharacterized protein LOC100272531 [Zea mays]
2 Hb_029799_010 0.1094058703 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
3 Hb_000359_020 0.121773593 - - amine oxidase, putative [Ricinus communis]
4 Hb_000398_010 0.1333053616 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000907_080 0.1337862852 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
6 Hb_003862_050 0.134442714 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
7 Hb_001221_170 0.1409146144 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
8 Hb_019654_100 0.141669966 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
9 Hb_000818_010 0.1417052073 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
10 Hb_000001_140 0.1418272004 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
11 Hb_004109_040 0.1419007129 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
12 Hb_000723_200 0.1424614866 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
13 Hb_000123_120 0.1429858776 - - actin depolymerizing factor 4 [Hevea brasiliensis]
14 Hb_011942_070 0.144326414 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
15 Hb_004204_170 0.1451166749 - - synaptosomal associated protein, putative [Ricinus communis]
16 Hb_011519_010 0.146151181 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
17 Hb_001621_150 0.1479160265 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
18 Hb_024071_010 0.1484596704 - - ADP-ribosylation factor, putative [Ricinus communis]
19 Hb_000063_140 0.1487413638 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
20 Hb_000116_010 0.1491351508 - - isocitrate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000417_310 Hb_000417_310 Hb_029799_010 Hb_029799_010 Hb_000417_310--Hb_029799_010 Hb_000359_020 Hb_000359_020 Hb_000417_310--Hb_000359_020 Hb_000398_010 Hb_000398_010 Hb_000417_310--Hb_000398_010 Hb_000907_080 Hb_000907_080 Hb_000417_310--Hb_000907_080 Hb_003862_050 Hb_003862_050 Hb_000417_310--Hb_003862_050 Hb_001221_170 Hb_001221_170 Hb_000417_310--Hb_001221_170 Hb_000661_290 Hb_000661_290 Hb_029799_010--Hb_000661_290 Hb_000818_010 Hb_000818_010 Hb_029799_010--Hb_000818_010 Hb_000983_090 Hb_000983_090 Hb_029799_010--Hb_000983_090 Hb_004204_170 Hb_004204_170 Hb_029799_010--Hb_004204_170 Hb_000856_190 Hb_000856_190 Hb_029799_010--Hb_000856_190 Hb_029799_010--Hb_000398_010 Hb_012508_030 Hb_012508_030 Hb_000359_020--Hb_012508_030 Hb_001439_150 Hb_001439_150 Hb_000359_020--Hb_001439_150 Hb_001360_040 Hb_001360_040 Hb_000359_020--Hb_001360_040 Hb_002620_010 Hb_002620_010 Hb_000359_020--Hb_002620_010 Hb_002685_140 Hb_002685_140 Hb_000359_020--Hb_002685_140 Hb_019654_100 Hb_019654_100 Hb_000359_020--Hb_019654_100 Hb_005016_160 Hb_005016_160 Hb_000398_010--Hb_005016_160 Hb_000398_010--Hb_000818_010 Hb_000676_010 Hb_000676_010 Hb_000398_010--Hb_000676_010 Hb_005541_010 Hb_005541_010 Hb_000398_010--Hb_005541_010 Hb_008725_260 Hb_008725_260 Hb_000398_010--Hb_008725_260 Hb_000230_120 Hb_000230_120 Hb_000398_010--Hb_000230_120 Hb_008695_210 Hb_008695_210 Hb_000907_080--Hb_008695_210 Hb_189003_080 Hb_189003_080 Hb_000907_080--Hb_189003_080 Hb_006915_050 Hb_006915_050 Hb_000907_080--Hb_006915_050 Hb_000001_140 Hb_000001_140 Hb_000907_080--Hb_000001_140 Hb_000409_020 Hb_000409_020 Hb_000907_080--Hb_000409_020 Hb_000898_040 Hb_000898_040 Hb_000907_080--Hb_000898_040 Hb_000175_460 Hb_000175_460 Hb_003862_050--Hb_000175_460 Hb_003862_050--Hb_019654_100 Hb_007813_040 Hb_007813_040 Hb_003862_050--Hb_007813_040 Hb_005348_140 Hb_005348_140 Hb_003862_050--Hb_005348_140 Hb_002496_030 Hb_002496_030 Hb_003862_050--Hb_002496_030 Hb_000010_400 Hb_000010_400 Hb_003862_050--Hb_000010_400 Hb_001221_170--Hb_019654_100 Hb_153258_010 Hb_153258_010 Hb_001221_170--Hb_153258_010 Hb_010795_010 Hb_010795_010 Hb_001221_170--Hb_010795_010 Hb_000041_150 Hb_000041_150 Hb_001221_170--Hb_000041_150 Hb_001221_170--Hb_003862_050 Hb_001245_070 Hb_001245_070 Hb_001221_170--Hb_001245_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.9059 58.1454 64.9217 21.39 56.657 52.8998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.1411 54.1144 142.18 15.4046 25.7697

CAGE analysis