Hb_000417_320

Information

Type -
Description -
Location Contig417: 261818-265401
Sequence    

Annotation

kegg
ID cic:CICLE_v10000333mg
description hypothetical protein
nr
ID XP_006432656.1
description hypothetical protein CICLE_v10000333mg [Citrus clementina]
swissprot
ID Q8RY25
description Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana GN=NUP98A PE=1 SV=1
trembl
ID V4T8K5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000333mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41278: 264067-264177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_320 0.0 - - hypothetical protein CICLE_v10000333mg [Citrus clementina]
2 Hb_000414_110 0.1341289218 - - PREDICTED: MATE efflux family protein 5 isoform X1 [Populus euphratica]
3 Hb_119494_010 0.1396772026 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
4 Hb_014894_010 0.1406692505 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
5 Hb_000318_200 0.1437130811 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
6 Hb_039145_010 0.1443437659 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
7 Hb_028811_010 0.1592403789 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
8 Hb_008147_070 0.1629424468 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
9 Hb_000120_390 0.1673617268 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
10 Hb_008864_090 0.1679859019 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
11 Hb_002005_100 0.1799790484 - - -
12 Hb_001214_090 0.1835044048 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
13 Hb_003090_110 0.1851308519 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001486_030 0.1853522232 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009732_020 0.1886383849 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
16 Hb_004079_080 0.1922905707 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
17 Hb_010029_020 0.1924576265 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
18 Hb_000165_210 0.1929245274 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
19 Hb_006846_120 0.1953151426 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
20 Hb_001246_030 0.1956861358 - - hypothetical protein JCGZ_14672 [Jatropha curcas]

Gene co-expression network

sample Hb_000417_320 Hb_000417_320 Hb_000414_110 Hb_000414_110 Hb_000417_320--Hb_000414_110 Hb_119494_010 Hb_119494_010 Hb_000417_320--Hb_119494_010 Hb_014894_010 Hb_014894_010 Hb_000417_320--Hb_014894_010 Hb_000318_200 Hb_000318_200 Hb_000417_320--Hb_000318_200 Hb_039145_010 Hb_039145_010 Hb_000417_320--Hb_039145_010 Hb_028811_010 Hb_028811_010 Hb_000417_320--Hb_028811_010 Hb_000414_110--Hb_028811_010 Hb_000165_210 Hb_000165_210 Hb_000414_110--Hb_000165_210 Hb_000808_170 Hb_000808_170 Hb_000414_110--Hb_000808_170 Hb_000061_090 Hb_000061_090 Hb_000414_110--Hb_000061_090 Hb_002291_010 Hb_002291_010 Hb_000414_110--Hb_002291_010 Hb_003253_050 Hb_003253_050 Hb_119494_010--Hb_003253_050 Hb_002005_100 Hb_002005_100 Hb_119494_010--Hb_002005_100 Hb_002400_410 Hb_002400_410 Hb_119494_010--Hb_002400_410 Hb_008147_070 Hb_008147_070 Hb_119494_010--Hb_008147_070 Hb_119494_010--Hb_014894_010 Hb_001214_090 Hb_001214_090 Hb_119494_010--Hb_001214_090 Hb_001246_030 Hb_001246_030 Hb_014894_010--Hb_001246_030 Hb_014894_010--Hb_002005_100 Hb_001258_060 Hb_001258_060 Hb_014894_010--Hb_001258_060 Hb_004079_080 Hb_004079_080 Hb_014894_010--Hb_004079_080 Hb_008864_090 Hb_008864_090 Hb_014894_010--Hb_008864_090 Hb_000796_250 Hb_000796_250 Hb_000318_200--Hb_000796_250 Hb_000120_390 Hb_000120_390 Hb_000318_200--Hb_000120_390 Hb_027380_200 Hb_027380_200 Hb_000318_200--Hb_027380_200 Hb_000318_200--Hb_008147_070 Hb_000318_200--Hb_119494_010 Hb_039145_010--Hb_014894_010 Hb_039145_010--Hb_001246_030 Hb_039145_010--Hb_008864_090 Hb_039145_010--Hb_002005_100 Hb_039145_010--Hb_119494_010 Hb_001486_030 Hb_001486_030 Hb_028811_010--Hb_001486_030 Hb_001623_160 Hb_001623_160 Hb_028811_010--Hb_001623_160 Hb_028811_010--Hb_001214_090 Hb_011909_010 Hb_011909_010 Hb_028811_010--Hb_011909_010 Hb_004064_010 Hb_004064_010 Hb_028811_010--Hb_004064_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2231 2.13978 0.461926 1.00583 0.947928 0.431867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14635 1.1496 1.56865 7.18119 1.5379

CAGE analysis