Hb_000417_350

Information

Type -
Description -
Location Contig417: 308681-310438
Sequence    

Annotation

kegg
ID rcu:RCOM_1251290
description hypothetical protein
nr
ID XP_002522256.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8D7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1251290 PE=4 SV=1
Gene Ontology
ID GO:0009567
description intracellular protein transport protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_350 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009711_040 0.0779573239 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
3 Hb_129637_010 0.0802798862 - - PREDICTED: alpha-mannosidase isoform X1 [Populus euphratica]
4 Hb_001053_110 0.1015498137 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
5 Hb_005333_120 0.1065258667 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
6 Hb_000306_050 0.1169445116 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
7 Hb_003171_070 0.1235965493 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
8 Hb_003266_060 0.1261586486 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
9 Hb_001369_620 0.1273589053 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
10 Hb_020805_110 0.1275441303 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
11 Hb_000676_130 0.1294641768 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
12 Hb_001856_150 0.1296017515 - - -
13 Hb_005489_120 0.1317478074 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
14 Hb_006314_020 0.1331217641 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
15 Hb_014865_010 0.1331396242 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
16 Hb_118707_020 0.1340840845 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000230_160 0.1361158171 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
18 Hb_000993_020 0.1382607428 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
19 Hb_000429_030 0.1401446066 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
20 Hb_001998_260 0.1410276015 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000417_350 Hb_000417_350 Hb_009711_040 Hb_009711_040 Hb_000417_350--Hb_009711_040 Hb_129637_010 Hb_129637_010 Hb_000417_350--Hb_129637_010 Hb_001053_110 Hb_001053_110 Hb_000417_350--Hb_001053_110 Hb_005333_120 Hb_005333_120 Hb_000417_350--Hb_005333_120 Hb_000306_050 Hb_000306_050 Hb_000417_350--Hb_000306_050 Hb_003171_070 Hb_003171_070 Hb_000417_350--Hb_003171_070 Hb_020805_110 Hb_020805_110 Hb_009711_040--Hb_020805_110 Hb_000676_380 Hb_000676_380 Hb_009711_040--Hb_000676_380 Hb_009711_040--Hb_003171_070 Hb_009711_040--Hb_000306_050 Hb_003090_230 Hb_003090_230 Hb_009711_040--Hb_003090_230 Hb_129637_010--Hb_001053_110 Hb_129637_010--Hb_009711_040 Hb_001369_620 Hb_001369_620 Hb_129637_010--Hb_001369_620 Hb_129637_010--Hb_005333_120 Hb_118707_020 Hb_118707_020 Hb_129637_010--Hb_118707_020 Hb_000300_170 Hb_000300_170 Hb_001053_110--Hb_000300_170 Hb_005489_120 Hb_005489_120 Hb_001053_110--Hb_005489_120 Hb_001053_110--Hb_005333_120 Hb_001053_110--Hb_001369_620 Hb_004462_040 Hb_004462_040 Hb_005333_120--Hb_004462_040 Hb_003435_070 Hb_003435_070 Hb_005333_120--Hb_003435_070 Hb_002333_010 Hb_002333_010 Hb_005333_120--Hb_002333_010 Hb_001856_150 Hb_001856_150 Hb_005333_120--Hb_001856_150 Hb_014115_010 Hb_014115_010 Hb_000306_050--Hb_014115_010 Hb_000306_050--Hb_020805_110 Hb_001596_030 Hb_001596_030 Hb_000306_050--Hb_001596_030 Hb_000836_250 Hb_000836_250 Hb_000306_050--Hb_000836_250 Hb_000297_220 Hb_000297_220 Hb_000306_050--Hb_000297_220 Hb_003171_070--Hb_000676_380 Hb_006314_020 Hb_006314_020 Hb_003171_070--Hb_006314_020 Hb_003171_070--Hb_001856_150 Hb_003371_040 Hb_003371_040 Hb_003171_070--Hb_003371_040 Hb_161346_010 Hb_161346_010 Hb_003171_070--Hb_161346_010 Hb_000429_030 Hb_000429_030 Hb_003171_070--Hb_000429_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0126052 0.937053 0.775447 3.79774 0.0118037 0.0124778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.37551 0.142116

CAGE analysis