Hb_000417_360

Information

Type -
Description -
Location Contig417: 316248-322446
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08880g
description POPTRDRAFT_1098459; hypothetical protein
nr
ID XP_012077529.1
description PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
swissprot
ID O49354
description Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Arabidopsis thaliana GN=COQ3 PE=2 SV=2
trembl
ID B9I8S8
description Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Populus trichocarpa GN=COQ3 PE=3 SV=1
Gene Ontology
ID GO:0031314
description hexaprenyldihydroxybenzoate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41281: 316394-322438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_360 0.0 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
2 Hb_010175_040 0.0577418181 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
3 Hb_091433_020 0.0614735174 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
4 Hb_000920_110 0.0622959653 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
5 Hb_000731_190 0.0693949362 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
6 Hb_001085_120 0.0700040684 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
7 Hb_000261_140 0.0727045354 - - -
8 Hb_004767_080 0.0748862678 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
9 Hb_033642_080 0.0750849599 - - V-type proton ATPase subunit E [Hevea brasiliensis]
10 Hb_011671_100 0.0760370199 - - 60S ribosomal protein L15 [Populus trichocarpa]
11 Hb_003787_010 0.0781456254 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
12 Hb_003656_070 0.0786817365 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
13 Hb_001616_040 0.0790208089 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
14 Hb_006478_160 0.0790799383 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
15 Hb_002995_020 0.0791719406 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
16 Hb_018124_010 0.0794949914 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
17 Hb_001484_070 0.0795274524 - - conserved hypothetical protein [Ricinus communis]
18 Hb_143496_010 0.0796027693 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
19 Hb_000363_480 0.0798384051 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
20 Hb_000815_060 0.0798812528 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]

Gene co-expression network

sample Hb_000417_360 Hb_000417_360 Hb_010175_040 Hb_010175_040 Hb_000417_360--Hb_010175_040 Hb_091433_020 Hb_091433_020 Hb_000417_360--Hb_091433_020 Hb_000920_110 Hb_000920_110 Hb_000417_360--Hb_000920_110 Hb_000731_190 Hb_000731_190 Hb_000417_360--Hb_000731_190 Hb_001085_120 Hb_001085_120 Hb_000417_360--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_000417_360--Hb_000261_140 Hb_010175_040--Hb_000261_140 Hb_010175_040--Hb_000920_110 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_001141_140 Hb_001141_140 Hb_010175_040--Hb_001141_140 Hb_001616_040 Hb_001616_040 Hb_010175_040--Hb_001616_040 Hb_033642_080 Hb_033642_080 Hb_091433_020--Hb_033642_080 Hb_004767_080 Hb_004767_080 Hb_091433_020--Hb_004767_080 Hb_091433_020--Hb_000731_190 Hb_000496_120 Hb_000496_120 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_000920_110--Hb_002056_050 Hb_001484_070 Hb_001484_070 Hb_000920_110--Hb_001484_070 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_000920_110--Hb_001616_040 Hb_006478_160 Hb_006478_160 Hb_000731_190--Hb_006478_160 Hb_000571_020 Hb_000571_020 Hb_000731_190--Hb_000571_020 Hb_001979_040 Hb_001979_040 Hb_000731_190--Hb_001979_040 Hb_000035_370 Hb_000035_370 Hb_000731_190--Hb_000035_370 Hb_000453_120 Hb_000453_120 Hb_001085_120--Hb_000453_120 Hb_000103_010 Hb_000103_010 Hb_001085_120--Hb_000103_010 Hb_001085_120--Hb_001484_070 Hb_001512_080 Hb_001512_080 Hb_001085_120--Hb_001512_080 Hb_001776_160 Hb_001776_160 Hb_001085_120--Hb_001776_160 Hb_001123_130 Hb_001123_130 Hb_000261_140--Hb_001123_130 Hb_000261_140--Hb_000920_110 Hb_000261_140--Hb_001484_070 Hb_000638_250 Hb_000638_250 Hb_000261_140--Hb_000638_250 Hb_004143_150 Hb_004143_150 Hb_000261_140--Hb_004143_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5286 8.96537 11.6586 13.2354 10.2752 10.1903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4264 43.6351 22.9545 15.5579 7.39425

CAGE analysis