Hb_000417_410

Information

Type -
Description -
Location Contig417: 343958-351581
Sequence    

Annotation

kegg
ID pop:POPTR_0011s06860g
description POPTRDRAFT_568667; hypothetical protein
nr
ID XP_012091833.1
description PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
swissprot
ID F4JRP0
description Protein STICHEL-like 3 OS=Arabidopsis thaliana GN=At4g18820 PE=3 SV=1
trembl
ID A0A067JBF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21612 PE=4 SV=1
Gene Ontology
ID GO:0009360
description protein stichel-like 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41290: 345874-346089 , PASA_asmbl_41291: 349987-351482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_410 0.0 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
2 Hb_000365_220 0.0915744597 - - protein phosphatase-1, putative [Ricinus communis]
3 Hb_026698_020 0.1006096027 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
4 Hb_073973_020 0.1047382623 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
5 Hb_002888_040 0.1142814021 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
6 Hb_001307_200 0.1145597993 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
7 Hb_000522_010 0.1181211036 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
8 Hb_001514_240 0.1252854892 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
9 Hb_003517_100 0.1275822043 transcription factor TF Family: GRAS -
10 Hb_000175_270 0.1308016845 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
11 Hb_001556_020 0.1349656196 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
12 Hb_001722_070 0.1358961268 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
13 Hb_005588_120 0.1381162949 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001404_090 0.1389009783 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
15 Hb_000221_180 0.1395349949 - - VQ motif-containing family protein [Populus trichocarpa]
16 Hb_132840_030 0.1440072042 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
17 Hb_029695_120 0.1449348927 - - hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
18 Hb_000256_160 0.1471970622 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
19 Hb_061908_020 0.1473054705 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
20 Hb_042202_020 0.1473554282 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000417_410 Hb_000417_410 Hb_000365_220 Hb_000365_220 Hb_000417_410--Hb_000365_220 Hb_026698_020 Hb_026698_020 Hb_000417_410--Hb_026698_020 Hb_073973_020 Hb_073973_020 Hb_000417_410--Hb_073973_020 Hb_002888_040 Hb_002888_040 Hb_000417_410--Hb_002888_040 Hb_001307_200 Hb_001307_200 Hb_000417_410--Hb_001307_200 Hb_000522_010 Hb_000522_010 Hb_000417_410--Hb_000522_010 Hb_008494_090 Hb_008494_090 Hb_000365_220--Hb_008494_090 Hb_000365_220--Hb_000522_010 Hb_000365_220--Hb_002888_040 Hb_003517_100 Hb_003517_100 Hb_000365_220--Hb_003517_100 Hb_004525_020 Hb_004525_020 Hb_000365_220--Hb_004525_020 Hb_001514_240 Hb_001514_240 Hb_026698_020--Hb_001514_240 Hb_009449_100 Hb_009449_100 Hb_026698_020--Hb_009449_100 Hb_026698_020--Hb_002888_040 Hb_001195_230 Hb_001195_230 Hb_026698_020--Hb_001195_230 Hb_132840_030 Hb_132840_030 Hb_026698_020--Hb_132840_030 Hb_073973_020--Hb_001307_200 Hb_000221_180 Hb_000221_180 Hb_073973_020--Hb_000221_180 Hb_001268_300 Hb_001268_300 Hb_073973_020--Hb_001268_300 Hb_073973_020--Hb_002888_040 Hb_001496_120 Hb_001496_120 Hb_073973_020--Hb_001496_120 Hb_001689_030 Hb_001689_030 Hb_002888_040--Hb_001689_030 Hb_002888_040--Hb_003517_100 Hb_002888_040--Hb_001195_230 Hb_002888_040--Hb_001268_300 Hb_004096_220 Hb_004096_220 Hb_001307_200--Hb_004096_220 Hb_001307_200--Hb_001268_300 Hb_001307_200--Hb_002888_040 Hb_001307_200--Hb_000221_180 Hb_000522_010--Hb_008494_090 Hb_000522_010--Hb_003517_100 Hb_000522_010--Hb_002888_040 Hb_004605_020 Hb_004605_020 Hb_000522_010--Hb_004605_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.13024 3.02538 2.04854 1.4217 0.0562233 0.341569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.321126 0.244566 0.219311 2.14358 2.81422

CAGE analysis