Hb_000418_030

Information

Type -
Description -
Location Contig418: 43625-45429
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12630g
description POPTRDRAFT_418950; hypothetical protein
nr
ID XP_012075677.1
description PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
swissprot
ID Q9DBD2
description E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2 SV=1
trembl
ID A0A067KIY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09266 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring fyve phd zinc finger superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41309: 43448-44040 , PASA_asmbl_41310: 44241-45288 , PASA_asmbl_41311: 44468-45218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_030 0.0 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
2 Hb_002600_010 0.1452618747 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
3 Hb_007894_030 0.1550146936 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_004306_140 0.1574667772 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_000236_110 0.1598894178 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
6 Hb_052764_080 0.1606364107 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
7 Hb_025432_010 0.1610936541 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
8 Hb_002324_050 0.1611526431 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
9 Hb_002000_130 0.1645763282 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
10 Hb_010174_190 0.1663726299 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
11 Hb_000028_460 0.166487158 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
12 Hb_022501_020 0.167339329 - - AMP dependent CoA ligase, putative [Ricinus communis]
13 Hb_000977_090 0.167352699 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
14 Hb_038777_010 0.168980146 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
15 Hb_000116_290 0.1697853485 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
16 Hb_001619_160 0.1703498029 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
17 Hb_001369_070 0.1703845222 - - unnamed protein product [Vitis vinifera]
18 Hb_006316_030 0.1714920964 - - aldehyde oxidase, putative [Ricinus communis]
19 Hb_050236_010 0.1715777763 - - hypothetical protein EUGRSUZ_E02960, partial [Eucalyptus grandis]
20 Hb_002276_100 0.1718979948 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000418_030 Hb_000418_030 Hb_002600_010 Hb_002600_010 Hb_000418_030--Hb_002600_010 Hb_007894_030 Hb_007894_030 Hb_000418_030--Hb_007894_030 Hb_004306_140 Hb_004306_140 Hb_000418_030--Hb_004306_140 Hb_000236_110 Hb_000236_110 Hb_000418_030--Hb_000236_110 Hb_052764_080 Hb_052764_080 Hb_000418_030--Hb_052764_080 Hb_025432_010 Hb_025432_010 Hb_000418_030--Hb_025432_010 Hb_000280_110 Hb_000280_110 Hb_002600_010--Hb_000280_110 Hb_002600_010--Hb_004306_140 Hb_002276_100 Hb_002276_100 Hb_002600_010--Hb_002276_100 Hb_009803_030 Hb_009803_030 Hb_002600_010--Hb_009803_030 Hb_002600_010--Hb_007894_030 Hb_000563_120 Hb_000563_120 Hb_002600_010--Hb_000563_120 Hb_001369_070 Hb_001369_070 Hb_007894_030--Hb_001369_070 Hb_020285_010 Hb_020285_010 Hb_007894_030--Hb_020285_010 Hb_000497_100 Hb_000497_100 Hb_007894_030--Hb_000497_100 Hb_010417_100 Hb_010417_100 Hb_007894_030--Hb_010417_100 Hb_038777_010 Hb_038777_010 Hb_007894_030--Hb_038777_010 Hb_001636_010 Hb_001636_010 Hb_007894_030--Hb_001636_010 Hb_114310_050 Hb_114310_050 Hb_004306_140--Hb_114310_050 Hb_004306_140--Hb_007894_030 Hb_000589_240 Hb_000589_240 Hb_004306_140--Hb_000589_240 Hb_000614_190 Hb_000614_190 Hb_004306_140--Hb_000614_190 Hb_000477_110 Hb_000477_110 Hb_004306_140--Hb_000477_110 Hb_014361_020 Hb_014361_020 Hb_004306_140--Hb_014361_020 Hb_000589_220 Hb_000589_220 Hb_000236_110--Hb_000589_220 Hb_002928_180 Hb_002928_180 Hb_000236_110--Hb_002928_180 Hb_002218_070 Hb_002218_070 Hb_000236_110--Hb_002218_070 Hb_000778_020 Hb_000778_020 Hb_000236_110--Hb_000778_020 Hb_022501_020 Hb_022501_020 Hb_000236_110--Hb_022501_020 Hb_013749_060 Hb_013749_060 Hb_000236_110--Hb_013749_060 Hb_073171_010 Hb_073171_010 Hb_052764_080--Hb_073171_010 Hb_001259_100 Hb_001259_100 Hb_052764_080--Hb_001259_100 Hb_000977_090 Hb_000977_090 Hb_052764_080--Hb_000977_090 Hb_005183_200 Hb_005183_200 Hb_052764_080--Hb_005183_200 Hb_000429_110 Hb_000429_110 Hb_052764_080--Hb_000429_110 Hb_000720_210 Hb_000720_210 Hb_052764_080--Hb_000720_210 Hb_010174_190 Hb_010174_190 Hb_025432_010--Hb_010174_190 Hb_006241_010 Hb_006241_010 Hb_025432_010--Hb_006241_010 Hb_064985_010 Hb_064985_010 Hb_025432_010--Hb_064985_010 Hb_001008_110 Hb_001008_110 Hb_025432_010--Hb_001008_110 Hb_025432_010--Hb_022501_020 Hb_042202_020 Hb_042202_020 Hb_025432_010--Hb_042202_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0448582 1.19144 0.280422 0.77014 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0808196 0.0743252 0.763987 0.413012

CAGE analysis