Hb_000418_040

Information

Type -
Description -
Location Contig418: 69064-70074
Sequence    

Annotation

kegg
ID rcu:RCOM_0377590
description hypothetical protein
nr
ID XP_002534506.1
description hypothetical protein RCOM_0377590 [Ricinus communis]
swissprot
ID Q9FGW0
description Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana GN=FLA20 PE=3 SV=1
trembl
ID B9T8D7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0377590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41312: 70008-70505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_040 0.0 - - hypothetical protein RCOM_0377590 [Ricinus communis]
2 Hb_118282_020 0.0946371281 - - PREDICTED: uncharacterized protein LOC105631532 isoform X3 [Jatropha curcas]
3 Hb_000661_150 0.095654355 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
4 Hb_004619_090 0.0992920339 - - conserved hypothetical protein [Ricinus communis]
5 Hb_059226_010 0.1002677341 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
6 Hb_001565_090 0.1052611033 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
7 Hb_007474_020 0.1075028116 - - multicopper oxidase, putative [Ricinus communis]
8 Hb_101133_050 0.1079337503 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
9 Hb_001699_270 0.1087168635 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
10 Hb_001307_150 0.1143212462 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_001390_040 0.1150767698 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
12 Hb_000567_290 0.1185139778 - - hypothetical protein RCOM_0303940 [Ricinus communis]
13 Hb_001950_090 0.1212953174 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
14 Hb_003847_060 0.1248777664 - - syntaxin, putative [Ricinus communis]
15 Hb_000069_650 0.125254863 - - conserved hypothetical protein [Ricinus communis]
16 Hb_016898_020 0.1256193887 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
17 Hb_000317_120 0.1259270075 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
18 Hb_003813_110 0.125983813 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007632_210 0.1277971411 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
20 Hb_000345_450 0.1293264602 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]

Gene co-expression network

sample Hb_000418_040 Hb_000418_040 Hb_118282_020 Hb_118282_020 Hb_000418_040--Hb_118282_020 Hb_000661_150 Hb_000661_150 Hb_000418_040--Hb_000661_150 Hb_004619_090 Hb_004619_090 Hb_000418_040--Hb_004619_090 Hb_059226_010 Hb_059226_010 Hb_000418_040--Hb_059226_010 Hb_001565_090 Hb_001565_090 Hb_000418_040--Hb_001565_090 Hb_007474_020 Hb_007474_020 Hb_000418_040--Hb_007474_020 Hb_004774_080 Hb_004774_080 Hb_118282_020--Hb_004774_080 Hb_000527_020 Hb_000527_020 Hb_118282_020--Hb_000527_020 Hb_005398_050 Hb_005398_050 Hb_118282_020--Hb_005398_050 Hb_118282_020--Hb_007474_020 Hb_001307_150 Hb_001307_150 Hb_118282_020--Hb_001307_150 Hb_001699_270 Hb_001699_270 Hb_000661_150--Hb_001699_270 Hb_101133_050 Hb_101133_050 Hb_000661_150--Hb_101133_050 Hb_001950_090 Hb_001950_090 Hb_000661_150--Hb_001950_090 Hb_001688_100 Hb_001688_100 Hb_000661_150--Hb_001688_100 Hb_000661_150--Hb_001307_150 Hb_003813_110 Hb_003813_110 Hb_004619_090--Hb_003813_110 Hb_000441_210 Hb_000441_210 Hb_004619_090--Hb_000441_210 Hb_004619_090--Hb_118282_020 Hb_004619_090--Hb_101133_050 Hb_001390_040 Hb_001390_040 Hb_004619_090--Hb_001390_040 Hb_006198_100 Hb_006198_100 Hb_059226_010--Hb_006198_100 Hb_006693_010 Hb_006693_010 Hb_059226_010--Hb_006693_010 Hb_000538_290 Hb_000538_290 Hb_059226_010--Hb_000538_290 Hb_000107_360 Hb_000107_360 Hb_059226_010--Hb_000107_360 Hb_009113_020 Hb_009113_020 Hb_059226_010--Hb_009113_020 Hb_000069_650 Hb_000069_650 Hb_001565_090--Hb_000069_650 Hb_001565_090--Hb_000661_150 Hb_001565_090--Hb_007474_020 Hb_001377_370 Hb_001377_370 Hb_001565_090--Hb_001377_370 Hb_001565_090--Hb_001390_040 Hb_007474_020--Hb_101133_050 Hb_007474_020--Hb_001390_040 Hb_000856_390 Hb_000856_390 Hb_007474_020--Hb_000856_390 Hb_007474_020--Hb_001307_150 Hb_000317_120 Hb_000317_120 Hb_007474_020--Hb_000317_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.027292 0.145534 5.77497 4.60421 0.0219001 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0499913 0.157273 0.144845 0.442612 0.321994

CAGE analysis