Hb_000418_100

Information

Type -
Description -
Location Contig418: 113550-116756
Sequence    

Annotation

kegg
ID tcc:TCM_006073
description F-box/LRR-repeat protein 23, putative isoform 1
nr
ID XP_012480661.1
description PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
swissprot
ID Q9M0U9
description F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1
trembl
ID A0A0D2NIS0
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G267100 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box protein skip19-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41324: 113597-116665 , PASA_asmbl_41325: 113617-116665
cDNA
(Sanger)
(ID:Location)		 034_C24.ab1: 113597-115926

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_100 0.0 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
2 Hb_001720_050 0.0631001019 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
3 Hb_000062_240 0.0659687753 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
4 Hb_001030_120 0.0670402124 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
5 Hb_182026_020 0.0683620453 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
6 Hb_082609_020 0.0720164103 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002609_110 0.0735496117 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
8 Hb_002811_360 0.0769804788 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
9 Hb_003777_330 0.0774830789 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
10 Hb_028872_140 0.0793241358 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
11 Hb_009838_100 0.0794297104 - - hypothetical protein RCOM_1217340 [Ricinus communis]
12 Hb_033642_010 0.0797448324 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
13 Hb_002686_270 0.0800798567 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001252_080 0.0818447884 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
15 Hb_015306_020 0.0821942897 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
16 Hb_002154_030 0.0836552767 - - RNA binding protein, putative [Ricinus communis]
17 Hb_000802_080 0.0838247221 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
18 Hb_001789_090 0.0842828482 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
19 Hb_002835_410 0.0843351319 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
20 Hb_028639_060 0.0858210979 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000418_100 Hb_000418_100 Hb_001720_050 Hb_001720_050 Hb_000418_100--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_000418_100--Hb_000062_240 Hb_001030_120 Hb_001030_120 Hb_000418_100--Hb_001030_120 Hb_182026_020 Hb_182026_020 Hb_000418_100--Hb_182026_020 Hb_082609_020 Hb_082609_020 Hb_000418_100--Hb_082609_020 Hb_002609_110 Hb_002609_110 Hb_000418_100--Hb_002609_110 Hb_003777_330 Hb_003777_330 Hb_001720_050--Hb_003777_330 Hb_000421_260 Hb_000421_260 Hb_001720_050--Hb_000421_260 Hb_033642_010 Hb_033642_010 Hb_001720_050--Hb_033642_010 Hb_002890_340 Hb_002890_340 Hb_001720_050--Hb_002890_340 Hb_000152_820 Hb_000152_820 Hb_001720_050--Hb_000152_820 Hb_004837_040 Hb_004837_040 Hb_000062_240--Hb_004837_040 Hb_001789_090 Hb_001789_090 Hb_000062_240--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000062_240--Hb_002811_360 Hb_000291_110 Hb_000291_110 Hb_000062_240--Hb_000291_110 Hb_015306_020 Hb_015306_020 Hb_000062_240--Hb_015306_020 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140 Hb_182026_020--Hb_002609_110 Hb_011918_080 Hb_011918_080 Hb_182026_020--Hb_011918_080 Hb_000556_080 Hb_000556_080 Hb_182026_020--Hb_000556_080 Hb_182026_020--Hb_002686_270 Hb_010638_020 Hb_010638_020 Hb_182026_020--Hb_010638_020 Hb_001584_330 Hb_001584_330 Hb_082609_020--Hb_001584_330 Hb_082609_020--Hb_003777_330 Hb_012634_010 Hb_012634_010 Hb_082609_020--Hb_012634_010 Hb_009838_100 Hb_009838_100 Hb_082609_020--Hb_009838_100 Hb_082609_020--Hb_000062_240 Hb_000057_040 Hb_000057_040 Hb_002609_110--Hb_000057_040 Hb_001252_080 Hb_001252_080 Hb_002609_110--Hb_001252_080 Hb_002149_020 Hb_002149_020 Hb_002609_110--Hb_002149_020 Hb_002609_110--Hb_004195_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.7525 38.7001 15.9971 30.299 95.4177 113.208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.3542 66.2235 89.9861 47.6486 13.0846

CAGE analysis