Hb_000418_120

Information

Type -
Description -
Location Contig418: 139109-141145
Sequence    

Annotation

kegg
ID tcc:TCM_006071
description Carbohydrate-binding X8 domain superfamily protein isoform 1
nr
ID XP_012075667.1
description PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
swissprot
ID Q9FJU9
description Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1
trembl
ID A0A067KFR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09255 PE=4 SV=1
Gene Ontology
ID GO:0004673
description glucan endo- -beta-glucosidase 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_120 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
2 Hb_006586_040 0.1022511813 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]
3 Hb_001339_030 0.1330967045 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
4 Hb_004558_060 0.1374778076 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
5 Hb_035995_010 0.1382824261 - - -
6 Hb_000849_030 0.1421025001 - - PREDICTED: fimbrin-2 [Jatropha curcas]
7 Hb_009785_030 0.1438326356 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
8 Hb_005215_050 0.1441988061 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
9 Hb_001369_190 0.1472232678 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
10 Hb_002874_200 0.1472369859 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
11 Hb_009736_020 0.1489583282 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
12 Hb_000395_310 0.1491301157 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_006154_010 0.1532332879 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
14 Hb_000005_360 0.1534628969 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002388_070 0.1555341789 - - ring finger protein, putative [Ricinus communis]
16 Hb_003376_140 0.1569679807 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
17 Hb_001775_080 0.1572526913 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
18 Hb_000193_070 0.1581378841 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
19 Hb_017862_030 0.1586239429 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
20 Hb_122951_010 0.158866523 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]

Gene co-expression network

sample Hb_000418_120 Hb_000418_120 Hb_006586_040 Hb_006586_040 Hb_000418_120--Hb_006586_040 Hb_001339_030 Hb_001339_030 Hb_000418_120--Hb_001339_030 Hb_004558_060 Hb_004558_060 Hb_000418_120--Hb_004558_060 Hb_035995_010 Hb_035995_010 Hb_000418_120--Hb_035995_010 Hb_000849_030 Hb_000849_030 Hb_000418_120--Hb_000849_030 Hb_009785_030 Hb_009785_030 Hb_000418_120--Hb_009785_030 Hb_002874_200 Hb_002874_200 Hb_006586_040--Hb_002874_200 Hb_001369_190 Hb_001369_190 Hb_006586_040--Hb_001369_190 Hb_006586_040--Hb_000849_030 Hb_001408_080 Hb_001408_080 Hb_006586_040--Hb_001408_080 Hb_006586_040--Hb_009785_030 Hb_000045_080 Hb_000045_080 Hb_001339_030--Hb_000045_080 Hb_002168_070 Hb_002168_070 Hb_001339_030--Hb_002168_070 Hb_017862_030 Hb_017862_030 Hb_001339_030--Hb_017862_030 Hb_000069_540 Hb_000069_540 Hb_001339_030--Hb_000069_540 Hb_000434_060 Hb_000434_060 Hb_001339_030--Hb_000434_060 Hb_009771_040 Hb_009771_040 Hb_001339_030--Hb_009771_040 Hb_004558_060--Hb_001369_190 Hb_009736_020 Hb_009736_020 Hb_004558_060--Hb_009736_020 Hb_002171_020 Hb_002171_020 Hb_004558_060--Hb_002171_020 Hb_005648_020 Hb_005648_020 Hb_004558_060--Hb_005648_020 Hb_002518_020 Hb_002518_020 Hb_004558_060--Hb_002518_020 Hb_002918_270 Hb_002918_270 Hb_004558_060--Hb_002918_270 Hb_035995_010--Hb_004558_060 Hb_001663_060 Hb_001663_060 Hb_035995_010--Hb_001663_060 Hb_154038_040 Hb_154038_040 Hb_035995_010--Hb_154038_040 Hb_035995_010--Hb_002518_020 Hb_035995_010--Hb_001369_190 Hb_000645_160 Hb_000645_160 Hb_035995_010--Hb_000645_160 Hb_000849_030--Hb_001408_080 Hb_003466_010 Hb_003466_010 Hb_000849_030--Hb_003466_010 Hb_036520_030 Hb_036520_030 Hb_000849_030--Hb_036520_030 Hb_122951_010 Hb_122951_010 Hb_000849_030--Hb_122951_010 Hb_001427_100 Hb_001427_100 Hb_000849_030--Hb_001427_100 Hb_103225_030 Hb_103225_030 Hb_000849_030--Hb_103225_030 Hb_000345_550 Hb_000345_550 Hb_009785_030--Hb_000345_550 Hb_009783_010 Hb_009783_010 Hb_009785_030--Hb_009783_010 Hb_000012_350 Hb_000012_350 Hb_009785_030--Hb_000012_350 Hb_009785_030--Hb_002874_200 Hb_007904_280 Hb_007904_280 Hb_009785_030--Hb_007904_280 Hb_012132_050 Hb_012132_050 Hb_009785_030--Hb_012132_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105277 0.269878 0.414329 1.3243 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.119859 0.547858

CAGE analysis