Hb_000418_130

Information

Type -
Description -
Location Contig418: 142221-143262
Sequence    

Annotation

kegg
ID rcu:RCOM_1091900
description Photosystem I reaction center subunit psaK, chloroplast precursor, putative
nr
ID XP_012075666.1
description PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
swissprot
ID Q9SUI5
description Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2
trembl
ID B9SKT8
description Photosystem I reaction center subunit psaK, chloroplast, putative OS=Ricinus communis GN=RCOM_1091900 PE=4 SV=1
Gene Ontology
ID GO:0009522
description photosystem i reaction center subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41330: 142202-143117
cDNA
(Sanger)
(ID:Location)		 002_O11.ab1: 142227-143115 , 003_F03.ab1: 142281-143081 , 004_C10.ab1: 142202-143080 , 007_E21.ab1: 142252-143059 , 018_B03.ab1: 142264-143064 , 020_J18.ab1: 142264-143062 , 037_G08.ab1: 142281-143081 , 045_B08.ab1: 142240-143110

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_130 0.0 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
2 Hb_009588_010 0.0310244656 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
3 Hb_002028_020 0.0387270368 - - acyltransferase, putative [Ricinus communis]
4 Hb_000042_280 0.0389631856 - - chlorophyll A/B binding protein, putative [Ricinus communis]
5 Hb_004032_400 0.0405129699 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
6 Hb_001488_230 0.0408165954 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
7 Hb_002752_020 0.0587190997 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
8 Hb_003734_070 0.0588368762 - - chlorophyll A/B binding protein, putative [Ricinus communis]
9 Hb_146255_030 0.0596883676 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
10 Hb_001735_040 0.060337363 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
11 Hb_004837_010 0.0689112691 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
12 Hb_008225_050 0.0691246861 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
13 Hb_007537_040 0.0712030351 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
14 Hb_004338_050 0.0713929148 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
15 Hb_003913_120 0.072282627 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
16 Hb_001277_130 0.072665742 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
17 Hb_149644_030 0.0728762524 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
18 Hb_000497_050 0.074641665 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
19 Hb_001571_100 0.0785114959 - - chlorophyll A-B binding family protein [Populus trichocarpa]
20 Hb_068580_010 0.079400433 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000418_130 Hb_000418_130 Hb_009588_010 Hb_009588_010 Hb_000418_130--Hb_009588_010 Hb_002028_020 Hb_002028_020 Hb_000418_130--Hb_002028_020 Hb_000042_280 Hb_000042_280 Hb_000418_130--Hb_000042_280 Hb_004032_400 Hb_004032_400 Hb_000418_130--Hb_004032_400 Hb_001488_230 Hb_001488_230 Hb_000418_130--Hb_001488_230 Hb_002752_020 Hb_002752_020 Hb_000418_130--Hb_002752_020 Hb_009588_010--Hb_002028_020 Hb_009588_010--Hb_001488_230 Hb_009588_010--Hb_004032_400 Hb_009588_010--Hb_000042_280 Hb_003734_070 Hb_003734_070 Hb_009588_010--Hb_003734_070 Hb_002028_020--Hb_001488_230 Hb_001571_100 Hb_001571_100 Hb_002028_020--Hb_001571_100 Hb_002028_020--Hb_000042_280 Hb_149644_030 Hb_149644_030 Hb_002028_020--Hb_149644_030 Hb_000042_280--Hb_001488_230 Hb_012098_100 Hb_012098_100 Hb_000042_280--Hb_012098_100 Hb_000042_280--Hb_149644_030 Hb_146255_030 Hb_146255_030 Hb_004032_400--Hb_146255_030 Hb_004032_400--Hb_002752_020 Hb_004837_010 Hb_004837_010 Hb_004032_400--Hb_004837_010 Hb_004032_400--Hb_002028_020 Hb_001488_230--Hb_149644_030 Hb_001488_230--Hb_004032_400 Hb_000497_050 Hb_000497_050 Hb_002752_020--Hb_000497_050 Hb_002752_020--Hb_146255_030 Hb_008225_050 Hb_008225_050 Hb_002752_020--Hb_008225_050 Hb_001277_350 Hb_001277_350 Hb_002752_020--Hb_001277_350 Hb_004338_050 Hb_004338_050 Hb_002752_020--Hb_004338_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.133393 71.6625 1561.35 1160.25 0 0.597488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.923138 0.604799 0 4.39797 2234.85

CAGE analysis