Hb_000418_180

Information

Type -
Description -
Location Contig418: 250750-261201
Sequence    

Annotation

kegg
ID rcu:RCOM_1092540
description hypothetical protein
nr
ID XP_002526611.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKU2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1092540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41350: 250476-250933 , PASA_asmbl_41353: 253370-255491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000676_220 0.0577427168 - - ADP-ribosylation factor, putative [Ricinus communis]
3 Hb_000412_110 0.0683222493 - - Rop4 [Hevea brasiliensis]
4 Hb_007152_020 0.0784123573 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
5 Hb_000107_390 0.078528013 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
6 Hb_000500_130 0.0909155288 - - small GTPase [Hevea brasiliensis]
7 Hb_000173_170 0.0912265429 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
8 Hb_012340_030 0.0922641513 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
9 Hb_006569_020 0.094085209 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
10 Hb_000771_110 0.0958329063 - - protein phosphatase 2C [Hevea brasiliensis]
11 Hb_000025_200 0.0978391449 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
12 Hb_000001_020 0.0990340377 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
13 Hb_023386_080 0.0997471038 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
14 Hb_000329_040 0.1003294072 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
15 Hb_168918_020 0.1004170313 - - pectin acetylesterase, putative [Ricinus communis]
16 Hb_001776_110 0.1016467698 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
17 Hb_000538_020 0.1019145135 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
18 Hb_002368_050 0.1020995876 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002973_080 0.1023277665 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
20 Hb_003777_180 0.1034114611 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000418_180 Hb_000418_180 Hb_000676_220 Hb_000676_220 Hb_000418_180--Hb_000676_220 Hb_000412_110 Hb_000412_110 Hb_000418_180--Hb_000412_110 Hb_007152_020 Hb_007152_020 Hb_000418_180--Hb_007152_020 Hb_000107_390 Hb_000107_390 Hb_000418_180--Hb_000107_390 Hb_000500_130 Hb_000500_130 Hb_000418_180--Hb_000500_130 Hb_000173_170 Hb_000173_170 Hb_000418_180--Hb_000173_170 Hb_000676_220--Hb_000412_110 Hb_004223_130 Hb_004223_130 Hb_000676_220--Hb_004223_130 Hb_006824_020 Hb_006824_020 Hb_000676_220--Hb_006824_020 Hb_000676_220--Hb_000107_390 Hb_001671_080 Hb_001671_080 Hb_000676_220--Hb_001671_080 Hb_023386_080 Hb_023386_080 Hb_000412_110--Hb_023386_080 Hb_000329_040 Hb_000329_040 Hb_000412_110--Hb_000329_040 Hb_000041_080 Hb_000041_080 Hb_000412_110--Hb_000041_080 Hb_002529_100 Hb_002529_100 Hb_000412_110--Hb_002529_100 Hb_007152_020--Hb_000173_170 Hb_007760_030 Hb_007760_030 Hb_007152_020--Hb_007760_030 Hb_012340_030 Hb_012340_030 Hb_007152_020--Hb_012340_030 Hb_007152_020--Hb_000107_390 Hb_000956_010 Hb_000956_010 Hb_007152_020--Hb_000956_010 Hb_168918_020 Hb_168918_020 Hb_000107_390--Hb_168918_020 Hb_000538_020 Hb_000538_020 Hb_000107_390--Hb_000538_020 Hb_000107_390--Hb_012340_030 Hb_000017_120 Hb_000017_120 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_000107_390--Hb_000001_020 Hb_159558_030 Hb_159558_030 Hb_000500_130--Hb_159558_030 Hb_000200_210 Hb_000200_210 Hb_000500_130--Hb_000200_210 Hb_002400_220 Hb_002400_220 Hb_000500_130--Hb_002400_220 Hb_004324_310 Hb_004324_310 Hb_000500_130--Hb_004324_310 Hb_125000_010 Hb_125000_010 Hb_000500_130--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_000500_130--Hb_022250_040 Hb_000173_170--Hb_007760_030 Hb_001191_100 Hb_001191_100 Hb_000173_170--Hb_001191_100 Hb_002326_030 Hb_002326_030 Hb_000173_170--Hb_002326_030 Hb_065500_050 Hb_065500_050 Hb_000173_170--Hb_065500_050 Hb_000173_170--Hb_000956_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
241.861 32.068 53.8513 50.6023 178.868 144.308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
207.865 184.41 185.631 27.3552 17.3677

CAGE analysis