Hb_000419_040

Information

Type -
Description -
Location Contig419: 63251-71001
Sequence    

Annotation

kegg
ID rcu:RCOM_0228160
description Chorismate synthase, chloroplast precursor, putative (EC:4.2.3.5)
nr
ID ADR70879.1
description chorismate synthase [Hevea brasiliensis]
swissprot
ID P57720
description Chorismate synthase, chloroplastic OS=Arabidopsis thaliana GN=EMB1144 PE=2 SV=2
trembl
ID V5IV15
description Chorismate synthase OS=Hevea brasiliensis GN=CS PE=2 SV=1
Gene Ontology
ID GO:0004107
description chorismate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41391: 63284-71080
cDNA
(Sanger)
(ID:Location)		 013_F01.ab1: 63284-66315 , 020_N07.ab1: 63284-66333 , 034_L07.ab1: 63284-67235 , 040_P11.ab1: 63284-66344 , 045_C05.ab1: 63290-66279

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000419_040 0.0 - - chorismate synthase [Hevea brasiliensis]
2 Hb_012522_030 0.0780171146 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_002936_050 0.0946066378 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
4 Hb_009265_060 0.1013387798 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
5 Hb_001863_480 0.1022036909 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
6 Hb_171554_080 0.1063875715 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_000345_030 0.1064796022 - - REF-like stress related protein 1 [Hevea brasiliensis]
8 Hb_001141_470 0.1088703719 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
9 Hb_001439_170 0.1099504563 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
10 Hb_000922_270 0.1102860344 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
11 Hb_001711_030 0.1104209726 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
12 Hb_002282_020 0.1111692136 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
13 Hb_002387_060 0.1116736195 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002897_060 0.1144151959 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
15 Hb_003038_180 0.1144570272 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
16 Hb_002539_080 0.1149515018 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
17 Hb_008695_190 0.1150942925 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
18 Hb_000861_040 0.1175838017 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
19 Hb_012725_110 0.11785708 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
20 Hb_007666_020 0.1203194892 - - alkaline phytoceramidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000419_040 Hb_000419_040 Hb_012522_030 Hb_012522_030 Hb_000419_040--Hb_012522_030 Hb_002936_050 Hb_002936_050 Hb_000419_040--Hb_002936_050 Hb_009265_060 Hb_009265_060 Hb_000419_040--Hb_009265_060 Hb_001863_480 Hb_001863_480 Hb_000419_040--Hb_001863_480 Hb_171554_080 Hb_171554_080 Hb_000419_040--Hb_171554_080 Hb_000345_030 Hb_000345_030 Hb_000419_040--Hb_000345_030 Hb_002387_060 Hb_002387_060 Hb_012522_030--Hb_002387_060 Hb_002326_030 Hb_002326_030 Hb_012522_030--Hb_002326_030 Hb_002291_030 Hb_002291_030 Hb_012522_030--Hb_002291_030 Hb_001711_030 Hb_001711_030 Hb_012522_030--Hb_001711_030 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020 Hb_042729_010 Hb_042729_010 Hb_002936_050--Hb_042729_010 Hb_000003_840 Hb_000003_840 Hb_002936_050--Hb_000003_840 Hb_002936_050--Hb_012522_030 Hb_001278_050 Hb_001278_050 Hb_002936_050--Hb_001278_050 Hb_002897_060 Hb_002897_060 Hb_002936_050--Hb_002897_060 Hb_024714_060 Hb_024714_060 Hb_009265_060--Hb_024714_060 Hb_012573_030 Hb_012573_030 Hb_009265_060--Hb_012573_030 Hb_004048_050 Hb_004048_050 Hb_009265_060--Hb_004048_050 Hb_009265_060--Hb_171554_080 Hb_001006_180 Hb_001006_180 Hb_009265_060--Hb_001006_180 Hb_001863_480--Hb_001711_030 Hb_004738_010 Hb_004738_010 Hb_001863_480--Hb_004738_010 Hb_003408_020 Hb_003408_020 Hb_001863_480--Hb_003408_020 Hb_001439_170 Hb_001439_170 Hb_001863_480--Hb_001439_170 Hb_001863_480--Hb_171554_080 Hb_002539_080 Hb_002539_080 Hb_001863_480--Hb_002539_080 Hb_171554_080--Hb_012573_030 Hb_054865_130 Hb_054865_130 Hb_171554_080--Hb_054865_130 Hb_171554_080--Hb_012522_030 Hb_000345_040 Hb_000345_040 Hb_000345_030--Hb_000345_040 Hb_006132_060 Hb_006132_060 Hb_000345_030--Hb_006132_060 Hb_004077_030 Hb_004077_030 Hb_000345_030--Hb_004077_030 Hb_001584_300 Hb_001584_300 Hb_000345_030--Hb_001584_300 Hb_002685_090 Hb_002685_090 Hb_000345_030--Hb_002685_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
774.852 76.8986 48.8254 112.313 477.82 435.729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1506.23 733.683 1306.32 224.499 89.2784

CAGE analysis