Hb_000419_060

Information

Type -
Description -
Location Contig419: 83447-89660
Sequence    

Annotation

kegg
ID rcu:RCOM_0228310
description Patatin T5 precursor, putative
nr
ID XP_012086303.1
description PREDICTED: patatin-like protein 6 [Jatropha curcas]
swissprot
ID Q9SV43
description Patatin-like protein 7 OS=Arabidopsis thaliana GN=PLP7 PE=2 SV=1
trembl
ID A0A067LK70
description Patatin OS=Jatropha curcas GN=JCGZ_18542 PE=3 SV=1
Gene Ontology
ID GO:0006629
description patatin-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41392: 83832-85601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000419_060 0.0 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
2 Hb_001969_090 0.1272749088 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
3 Hb_001021_130 0.1289216727 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
4 Hb_010174_060 0.137597828 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
5 Hb_012114_040 0.1432292314 - - DNA binding protein, putative [Ricinus communis]
6 Hb_000196_080 0.1470000207 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
7 Hb_004705_120 0.1501219261 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000789_220 0.1521527573 - - phosphofructokinase [Hevea brasiliensis]
9 Hb_002851_020 0.1522082261 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
10 Hb_020419_010 0.153894585 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
11 Hb_000503_050 0.1539915084 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
12 Hb_009510_040 0.1541666238 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
13 Hb_000317_280 0.1544716301 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
14 Hb_003442_070 0.1547458294 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
15 Hb_002835_180 0.1570094531 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000003_050 0.158458278 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
17 Hb_000446_030 0.1588568809 - - amino acid binding protein, putative [Ricinus communis]
18 Hb_015690_020 0.1602757132 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
19 Hb_001373_180 0.1605026712 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
20 Hb_165669_010 0.1619200924 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000419_060 Hb_000419_060 Hb_001969_090 Hb_001969_090 Hb_000419_060--Hb_001969_090 Hb_001021_130 Hb_001021_130 Hb_000419_060--Hb_001021_130 Hb_010174_060 Hb_010174_060 Hb_000419_060--Hb_010174_060 Hb_012114_040 Hb_012114_040 Hb_000419_060--Hb_012114_040 Hb_000196_080 Hb_000196_080 Hb_000419_060--Hb_000196_080 Hb_004705_120 Hb_004705_120 Hb_000419_060--Hb_004705_120 Hb_007747_200 Hb_007747_200 Hb_001969_090--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_001969_090--Hb_000317_280 Hb_000575_150 Hb_000575_150 Hb_001969_090--Hb_000575_150 Hb_003687_240 Hb_003687_240 Hb_001969_090--Hb_003687_240 Hb_010883_090 Hb_010883_090 Hb_001969_090--Hb_010883_090 Hb_000805_020 Hb_000805_020 Hb_001969_090--Hb_000805_020 Hb_001021_130--Hb_010174_060 Hb_003647_060 Hb_003647_060 Hb_001021_130--Hb_003647_060 Hb_007508_090 Hb_007508_090 Hb_001021_130--Hb_007508_090 Hb_074783_010 Hb_074783_010 Hb_001021_130--Hb_074783_010 Hb_000189_560 Hb_000189_560 Hb_001021_130--Hb_000189_560 Hb_001021_130--Hb_001969_090 Hb_000069_600 Hb_000069_600 Hb_010174_060--Hb_000069_600 Hb_006615_020 Hb_006615_020 Hb_010174_060--Hb_006615_020 Hb_000789_220 Hb_000789_220 Hb_010174_060--Hb_000789_220 Hb_000010_460 Hb_000010_460 Hb_010174_060--Hb_000010_460 Hb_034406_030 Hb_034406_030 Hb_010174_060--Hb_034406_030 Hb_001663_050 Hb_001663_050 Hb_012114_040--Hb_001663_050 Hb_005568_120 Hb_005568_120 Hb_012114_040--Hb_005568_120 Hb_155764_010 Hb_155764_010 Hb_012114_040--Hb_155764_010 Hb_032208_060 Hb_032208_060 Hb_012114_040--Hb_032208_060 Hb_001519_050 Hb_001519_050 Hb_012114_040--Hb_001519_050 Hb_002061_040 Hb_002061_040 Hb_012114_040--Hb_002061_040 Hb_000424_210 Hb_000424_210 Hb_000196_080--Hb_000424_210 Hb_000125_030 Hb_000125_030 Hb_000196_080--Hb_000125_030 Hb_003504_020 Hb_003504_020 Hb_000196_080--Hb_003504_020 Hb_000162_140 Hb_000162_140 Hb_000196_080--Hb_000162_140 Hb_003581_260 Hb_003581_260 Hb_000196_080--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000196_080--Hb_007382_150 Hb_004705_120--Hb_001519_050 Hb_000125_190 Hb_000125_190 Hb_004705_120--Hb_000125_190 Hb_008616_070 Hb_008616_070 Hb_004705_120--Hb_008616_070 Hb_000373_130 Hb_000373_130 Hb_004705_120--Hb_000373_130 Hb_015778_010 Hb_015778_010 Hb_004705_120--Hb_015778_010 Hb_001080_280 Hb_001080_280 Hb_004705_120--Hb_001080_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.13079 12.664 1.08242 5.22462 2.52637 6.64879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9696 17.1249 20.6264 11.9041 6.90688

CAGE analysis