Hb_000419_070

Information

Type -
Description -
Location Contig419: 98258-102288
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22880g
description POPTRDRAFT_822559; Vacuolar ATP synthase subunit G 2 family protein
nr
ID NP_001294895.1
description V-type proton ATPase subunit G 1 [Jatropha curcas]
swissprot
ID Q9SP55
description V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1
trembl
ID D6BR50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18540 PE=2 SV=1
Gene Ontology
ID GO:0016471
description v-type proton atpase subunit g 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41394: 98255-103274 , PASA_asmbl_41395: 98295-103175
cDNA
(Sanger)
(ID:Location)		 029_C06.ab1: 98255-103203 , 036_B20.ab1: 98325-103231 , 037_P06.ab1: 98311-103209 , 040_J10.ab1: 98325-103231

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000419_070 0.0 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
2 Hb_001329_150 0.0651298525 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
3 Hb_001053_140 0.0712312818 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
4 Hb_011485_020 0.0876355882 - - protein with unknown function [Ricinus communis]
5 Hb_011512_040 0.0876781662 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
6 Hb_010883_050 0.0897539486 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
7 Hb_002303_060 0.0908355025 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003622_040 0.0933679662 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
9 Hb_000189_240 0.0936792734 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
10 Hb_000571_020 0.0957565718 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
11 Hb_001776_160 0.0967935973 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
12 Hb_003849_150 0.0974449681 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
13 Hb_000336_240 0.0991732013 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
14 Hb_000300_430 0.1002921345 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
15 Hb_008071_020 0.1008265838 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
16 Hb_000254_050 0.100873532 - - hypothetical protein VITISV_010510 [Vitis vinifera]
17 Hb_005054_210 0.1021278199 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
18 Hb_000638_170 0.1026485198 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
19 Hb_001123_160 0.1029047367 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_003605_160 0.1030989966 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]

Gene co-expression network

sample Hb_000419_070 Hb_000419_070 Hb_001329_150 Hb_001329_150 Hb_000419_070--Hb_001329_150 Hb_001053_140 Hb_001053_140 Hb_000419_070--Hb_001053_140 Hb_011485_020 Hb_011485_020 Hb_000419_070--Hb_011485_020 Hb_011512_040 Hb_011512_040 Hb_000419_070--Hb_011512_040 Hb_010883_050 Hb_010883_050 Hb_000419_070--Hb_010883_050 Hb_002303_060 Hb_002303_060 Hb_000419_070--Hb_002303_060 Hb_001329_150--Hb_001053_140 Hb_000571_020 Hb_000571_020 Hb_001329_150--Hb_000571_020 Hb_002000_140 Hb_002000_140 Hb_001329_150--Hb_002000_140 Hb_001329_150--Hb_002303_060 Hb_000189_240 Hb_000189_240 Hb_001329_150--Hb_000189_240 Hb_001053_140--Hb_002303_060 Hb_010560_030 Hb_010560_030 Hb_001053_140--Hb_010560_030 Hb_001053_140--Hb_000189_240 Hb_005269_080 Hb_005269_080 Hb_001053_140--Hb_005269_080 Hb_013405_140 Hb_013405_140 Hb_011485_020--Hb_013405_140 Hb_000436_030 Hb_000436_030 Hb_011485_020--Hb_000436_030 Hb_002016_080 Hb_002016_080 Hb_011485_020--Hb_002016_080 Hb_000479_160 Hb_000479_160 Hb_011485_020--Hb_000479_160 Hb_011485_020--Hb_001053_140 Hb_007037_020 Hb_007037_020 Hb_011485_020--Hb_007037_020 Hb_017225_020 Hb_017225_020 Hb_011512_040--Hb_017225_020 Hb_005446_010 Hb_005446_010 Hb_011512_040--Hb_005446_010 Hb_000853_190 Hb_000853_190 Hb_011512_040--Hb_000853_190 Hb_003849_150 Hb_003849_150 Hb_011512_040--Hb_003849_150 Hb_011512_040--Hb_010883_050 Hb_000436_130 Hb_000436_130 Hb_010883_050--Hb_000436_130 Hb_006420_080 Hb_006420_080 Hb_010883_050--Hb_006420_080 Hb_002007_210 Hb_002007_210 Hb_010883_050--Hb_002007_210 Hb_000336_240 Hb_000336_240 Hb_010883_050--Hb_000336_240 Hb_076233_040 Hb_076233_040 Hb_010883_050--Hb_076233_040 Hb_003697_040 Hb_003697_040 Hb_010883_050--Hb_003697_040 Hb_002303_060--Hb_005269_080 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9791 5.1273 16.1252 24.6809 8.87196 5.8822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.73 39.2421 29.564 14.4646 16.7498

CAGE analysis