Hb_000419_140

Information

Type -
Description -
Location Contig419: 178070-179887
Sequence    

Annotation

kegg
ID rcu:RCOM_0026890
description Aquaporin PIP2.1, putative
nr
ID XP_002532756.1
description Aquaporin PIP2.1, putative [Ricinus communis]
swissprot
ID Q84RL7
description Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2
trembl
ID B9T3D7
description Aquaporin PIP2.1, putative OS=Ricinus communis GN=RCOM_0026890 PE=3 SV=1
Gene Ontology
ID GO:0016020
description probable aquaporin pip2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41403: 179532-179641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000419_140 0.0 - - Aquaporin PIP2.1, putative [Ricinus communis]
2 Hb_000076_280 0.0575623981 - - PREDICTED: pectinesterase-like [Populus euphratica]
3 Hb_001777_010 0.0609740253 - - -
4 Hb_027400_020 0.0674444423 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
5 Hb_001769_070 0.0836481095 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
6 Hb_000329_010 0.0840583052 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
7 Hb_002616_020 0.0842641286 - - PREDICTED: peroxidase 3 [Jatropha curcas]
8 Hb_000834_130 0.092458111 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002869_090 0.0940258312 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
10 Hb_002809_080 0.0949555608 - - conserved hypothetical protein [Ricinus communis]
11 Hb_141194_020 0.1046586801 - - carbohydrate transporter, putative [Ricinus communis]
12 Hb_003607_090 0.105256387 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
13 Hb_031224_010 0.1065576787 - - -
14 Hb_000659_050 0.1077910503 - - PREDICTED: basic blue protein-like [Jatropha curcas]
15 Hb_009456_010 0.1112158948 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
16 Hb_005000_280 0.1119407346 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
17 Hb_002701_030 0.1120453519 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
18 Hb_002566_020 0.1140015839 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
19 Hb_000389_100 0.1143579365 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
20 Hb_178049_010 0.1163326717 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000419_140 Hb_000419_140 Hb_000076_280 Hb_000076_280 Hb_000419_140--Hb_000076_280 Hb_001777_010 Hb_001777_010 Hb_000419_140--Hb_001777_010 Hb_027400_020 Hb_027400_020 Hb_000419_140--Hb_027400_020 Hb_001769_070 Hb_001769_070 Hb_000419_140--Hb_001769_070 Hb_000329_010 Hb_000329_010 Hb_000419_140--Hb_000329_010 Hb_002616_020 Hb_002616_020 Hb_000419_140--Hb_002616_020 Hb_000076_280--Hb_027400_020 Hb_000076_280--Hb_001769_070 Hb_000076_280--Hb_000329_010 Hb_000076_280--Hb_002616_020 Hb_002809_080 Hb_002809_080 Hb_000076_280--Hb_002809_080 Hb_001777_010--Hb_000076_280 Hb_002566_020 Hb_002566_020 Hb_001777_010--Hb_002566_020 Hb_001777_010--Hb_000329_010 Hb_009456_010 Hb_009456_010 Hb_001777_010--Hb_009456_010 Hb_001777_010--Hb_001769_070 Hb_027400_020--Hb_002616_020 Hb_027400_020--Hb_001769_070 Hb_002869_090 Hb_002869_090 Hb_027400_020--Hb_002869_090 Hb_027400_020--Hb_000329_010 Hb_001769_070--Hb_000329_010 Hb_002518_020 Hb_002518_020 Hb_001769_070--Hb_002518_020 Hb_005000_280 Hb_005000_280 Hb_001769_070--Hb_005000_280 Hb_000329_010--Hb_002809_080 Hb_031224_010 Hb_031224_010 Hb_000329_010--Hb_031224_010 Hb_149055_010 Hb_149055_010 Hb_000329_010--Hb_149055_010 Hb_000352_360 Hb_000352_360 Hb_002616_020--Hb_000352_360 Hb_002616_020--Hb_002869_090 Hb_003849_170 Hb_003849_170 Hb_002616_020--Hb_003849_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0594064 57.1427 164.115 684.691 0.535302 2.72424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.278484 0.109385 0.184448 168.749 159.106

CAGE analysis