Hb_000421_020

Information

Type -
Description -
Location Contig421: 19563-22724
Sequence    

Annotation

kegg
ID egr:104432832
description L-ascorbate peroxidase, cytosolic
nr
ID AAO14118.1
description ascorbate peroxidase [Hevea brasiliensis]
swissprot
ID P48534
description L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2
trembl
ID Q8GZP1
description Ascorbate peroxidase OS=Hevea brasiliensis GN=APX PE=2 SV=1
Gene Ontology
ID GO:0004601
description l-ascorbate cytosolic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41589: 19530-22796 , PASA_asmbl_41590: 19503-22830 , PASA_asmbl_41591: 19530-22727
cDNA
(Sanger)
(ID:Location)		 001_I16.ab1: 19530-22378 , 024_H08.ab1: 19530-22133 , 026_C04.ab1: 19536-21360 , 028_G01.ab1: 19530-22190 , 040_F06.ab1: 19530-22370

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_020 0.0 - - ascorbate peroxidase [Hevea brasiliensis]
2 Hb_025236_020 0.120357944 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
3 Hb_000008_430 0.132677434 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
4 Hb_002375_050 0.1372675466 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
5 Hb_002910_010 0.1477619541 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
6 Hb_003589_020 0.1482006606 - - -
7 Hb_002343_020 0.1547434926 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
8 Hb_000649_300 0.1570179444 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
9 Hb_001842_060 0.1578635112 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
10 Hb_001053_200 0.1588534504 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
11 Hb_002471_140 0.1625233102 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
12 Hb_002874_170 0.1639191273 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
13 Hb_005724_050 0.1650084168 - - -
14 Hb_029622_020 0.1673404484 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004032_090 0.1686987548 - - PREDICTED: protein AIG1 [Jatropha curcas]
16 Hb_001409_050 0.1695884393 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_004976_040 0.1750981338 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
18 Hb_008103_100 0.1754142777 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
19 Hb_000027_130 0.1754240169 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
20 Hb_008175_030 0.1769372979 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000421_020 Hb_000421_020 Hb_025236_020 Hb_025236_020 Hb_000421_020--Hb_025236_020 Hb_000008_430 Hb_000008_430 Hb_000421_020--Hb_000008_430 Hb_002375_050 Hb_002375_050 Hb_000421_020--Hb_002375_050 Hb_002910_010 Hb_002910_010 Hb_000421_020--Hb_002910_010 Hb_003589_020 Hb_003589_020 Hb_000421_020--Hb_003589_020 Hb_002343_020 Hb_002343_020 Hb_000421_020--Hb_002343_020 Hb_025236_020--Hb_002343_020 Hb_005814_010 Hb_005814_010 Hb_025236_020--Hb_005814_010 Hb_052434_010 Hb_052434_010 Hb_025236_020--Hb_052434_010 Hb_003529_230 Hb_003529_230 Hb_025236_020--Hb_003529_230 Hb_000771_070 Hb_000771_070 Hb_025236_020--Hb_000771_070 Hb_005724_050 Hb_005724_050 Hb_000008_430--Hb_005724_050 Hb_004032_090 Hb_004032_090 Hb_000008_430--Hb_004032_090 Hb_001294_040 Hb_001294_040 Hb_000008_430--Hb_001294_040 Hb_007290_070 Hb_007290_070 Hb_000008_430--Hb_007290_070 Hb_005539_100 Hb_005539_100 Hb_000008_430--Hb_005539_100 Hb_001205_180 Hb_001205_180 Hb_000008_430--Hb_001205_180 Hb_000189_470 Hb_000189_470 Hb_002375_050--Hb_000189_470 Hb_002471_140 Hb_002471_140 Hb_002375_050--Hb_002471_140 Hb_000345_340 Hb_000345_340 Hb_002375_050--Hb_000345_340 Hb_001053_200 Hb_001053_200 Hb_002375_050--Hb_001053_200 Hb_008175_030 Hb_008175_030 Hb_002375_050--Hb_008175_030 Hb_000649_300 Hb_000649_300 Hb_002910_010--Hb_000649_300 Hb_002910_010--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_002910_010--Hb_008103_100 Hb_000027_130 Hb_000027_130 Hb_002910_010--Hb_000027_130 Hb_002910_010--Hb_000771_070 Hb_002073_020 Hb_002073_020 Hb_002910_010--Hb_002073_020 Hb_003589_020--Hb_000008_430 Hb_003589_020--Hb_002375_050 Hb_000953_040 Hb_000953_040 Hb_003589_020--Hb_000953_040 Hb_003589_020--Hb_002910_010 Hb_001409_050 Hb_001409_050 Hb_003589_020--Hb_001409_050 Hb_000402_030 Hb_000402_030 Hb_002343_020--Hb_000402_030 Hb_005649_010 Hb_005649_010 Hb_002343_020--Hb_005649_010 Hb_002343_020--Hb_004032_090 Hb_001123_170 Hb_001123_170 Hb_002343_020--Hb_001123_170 Hb_005375_070 Hb_005375_070 Hb_002343_020--Hb_005375_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
113.451 1353.43 688.489 237.433 108.928 86.6687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.2679 41.8236 8.62268 722.458 222.514

CAGE analysis