Hb_000421_120

Information

Type -
Description -
Location Contig421: 86857-88935
Sequence    

Annotation

kegg
ID rcu:RCOM_0624670
description sentrin/sumo-specific protease, senp8, putative
nr
ID XP_012064898.1
description PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
swissprot
ID Q9LSS7
description NEDD8-specific protease 1 OS=Arabidopsis thaliana GN=NEDP1 PE=2 SV=1
trembl
ID A0A067LIP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05591 PE=4 SV=1
Gene Ontology
ID GO:0008234
description nedd8-specific protease 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41608: 86709-88975
cDNA
(Sanger)
(ID:Location)		 027_F04.ab1: 86709-88425

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_120 0.0 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
2 Hb_000224_060 0.0750971768 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
3 Hb_002813_010 0.0822978934 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
4 Hb_000046_010 0.0839341741 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
5 Hb_000865_080 0.0847528682 - - arsenite-resistance protein, putative [Ricinus communis]
6 Hb_076693_020 0.0859422622 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
7 Hb_001168_040 0.0885024294 - - -
8 Hb_000140_080 0.0895712834 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
9 Hb_000025_360 0.0897252212 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
10 Hb_003206_030 0.0901468531 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
11 Hb_045793_010 0.0903404175 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
12 Hb_001718_090 0.0908035096 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
13 Hb_004970_150 0.0927261188 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
14 Hb_000136_090 0.0934931645 - - programmed cell death protein, putative [Ricinus communis]
15 Hb_002783_310 0.0945746505 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
16 Hb_033095_020 0.0950834259 - - conserved hypothetical protein [Ricinus communis]
17 Hb_023827_040 0.0963158962 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
18 Hb_031527_020 0.0976462809 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
19 Hb_003020_110 0.0977649584 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
20 Hb_164010_060 0.0977821551 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]

Gene co-expression network

sample Hb_000421_120 Hb_000421_120 Hb_000224_060 Hb_000224_060 Hb_000421_120--Hb_000224_060 Hb_002813_010 Hb_002813_010 Hb_000421_120--Hb_002813_010 Hb_000046_010 Hb_000046_010 Hb_000421_120--Hb_000046_010 Hb_000865_080 Hb_000865_080 Hb_000421_120--Hb_000865_080 Hb_076693_020 Hb_076693_020 Hb_000421_120--Hb_076693_020 Hb_001168_040 Hb_001168_040 Hb_000421_120--Hb_001168_040 Hb_003878_140 Hb_003878_140 Hb_000224_060--Hb_003878_140 Hb_000291_190 Hb_000291_190 Hb_000224_060--Hb_000291_190 Hb_000224_060--Hb_000865_080 Hb_000140_080 Hb_000140_080 Hb_000224_060--Hb_000140_080 Hb_000025_360 Hb_000025_360 Hb_000224_060--Hb_000025_360 Hb_001616_050 Hb_001616_050 Hb_000224_060--Hb_001616_050 Hb_005946_170 Hb_005946_170 Hb_002813_010--Hb_005946_170 Hb_001080_270 Hb_001080_270 Hb_002813_010--Hb_001080_270 Hb_002813_010--Hb_000865_080 Hb_002524_040 Hb_002524_040 Hb_002813_010--Hb_002524_040 Hb_004162_280 Hb_004162_280 Hb_002813_010--Hb_004162_280 Hb_001718_090 Hb_001718_090 Hb_000046_010--Hb_001718_090 Hb_000441_070 Hb_000441_070 Hb_000046_010--Hb_000441_070 Hb_000046_010--Hb_000025_360 Hb_000510_310 Hb_000510_310 Hb_000046_010--Hb_000510_310 Hb_006252_020 Hb_006252_020 Hb_000046_010--Hb_006252_020 Hb_002188_110 Hb_002188_110 Hb_000046_010--Hb_002188_110 Hb_000865_080--Hb_000291_190 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000865_080--Hb_000025_360 Hb_000322_150 Hb_000322_150 Hb_076693_020--Hb_000322_150 Hb_045793_010 Hb_045793_010 Hb_076693_020--Hb_045793_010 Hb_076693_020--Hb_000441_070 Hb_076693_020--Hb_023827_040 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040 Hb_001623_140 Hb_001623_140 Hb_001168_040--Hb_001623_140 Hb_033095_020 Hb_033095_020 Hb_001168_040--Hb_033095_020 Hb_001288_080 Hb_001288_080 Hb_001168_040--Hb_001288_080 Hb_000406_240 Hb_000406_240 Hb_001168_040--Hb_000406_240 Hb_000394_190 Hb_000394_190 Hb_001168_040--Hb_000394_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.649 23.0117 5.63345 6.82815 20.8324 20.8368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8112 16.1192 7.92953 11.6044 6.44585

CAGE analysis