Hb_000421_130

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig421: 104673-106254
Sequence    

Annotation

kegg
ID rcu:RCOM_0624640
description zinc finger protein, putative
nr
ID XP_002532252.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8LE43
description Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2
trembl
ID B9T1Y3
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0624640 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41609: 104384-106279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_130 0.0 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
2 Hb_008147_050 0.1966544329 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
3 Hb_001504_090 0.2096155572 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_002875_050 0.2150386757 - - PREDICTED: proteoglycan 4 [Jatropha curcas]
5 Hb_001390_010 0.2159379892 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
6 Hb_000207_190 0.2262841117 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
7 Hb_001195_190 0.2323556489 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000366_190 0.2345494837 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
9 Hb_000505_110 0.2452561395 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
10 Hb_000749_110 0.2471963403 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
11 Hb_000853_260 0.2501317619 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
12 Hb_027380_230 0.2514109102 - - PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
13 Hb_001621_160 0.2517969446 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_000264_010 0.2561558354 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
15 Hb_011164_010 0.2587468788 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
16 Hb_000941_140 0.2590472634 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
17 Hb_020805_010 0.2593125347 - - protein with unknown function [Ricinus communis]
18 Hb_010174_210 0.2598763682 - - PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_000062_030 0.2614681755 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
20 Hb_001584_370 0.2640316255 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]

Gene co-expression network

sample Hb_000421_130 Hb_000421_130 Hb_008147_050 Hb_008147_050 Hb_000421_130--Hb_008147_050 Hb_001504_090 Hb_001504_090 Hb_000421_130--Hb_001504_090 Hb_002875_050 Hb_002875_050 Hb_000421_130--Hb_002875_050 Hb_001390_010 Hb_001390_010 Hb_000421_130--Hb_001390_010 Hb_000207_190 Hb_000207_190 Hb_000421_130--Hb_000207_190 Hb_001195_190 Hb_001195_190 Hb_000421_130--Hb_001195_190 Hb_011164_010 Hb_011164_010 Hb_008147_050--Hb_011164_010 Hb_027380_230 Hb_027380_230 Hb_008147_050--Hb_027380_230 Hb_000062_030 Hb_000062_030 Hb_008147_050--Hb_000062_030 Hb_000505_110 Hb_000505_110 Hb_008147_050--Hb_000505_110 Hb_000206_120 Hb_000206_120 Hb_008147_050--Hb_000206_120 Hb_004884_030 Hb_004884_030 Hb_008147_050--Hb_004884_030 Hb_001504_090--Hb_008147_050 Hb_010254_020 Hb_010254_020 Hb_001504_090--Hb_010254_020 Hb_002039_050 Hb_002039_050 Hb_001504_090--Hb_002039_050 Hb_000001_160 Hb_000001_160 Hb_001504_090--Hb_000001_160 Hb_000366_190 Hb_000366_190 Hb_001504_090--Hb_000366_190 Hb_001491_030 Hb_001491_030 Hb_002875_050--Hb_001491_030 Hb_000058_110 Hb_000058_110 Hb_002875_050--Hb_000058_110 Hb_004306_040 Hb_004306_040 Hb_002875_050--Hb_004306_040 Hb_001675_190 Hb_001675_190 Hb_002875_050--Hb_001675_190 Hb_003912_030 Hb_003912_030 Hb_002875_050--Hb_003912_030 Hb_030627_040 Hb_030627_040 Hb_001390_010--Hb_030627_040 Hb_000037_110 Hb_000037_110 Hb_001390_010--Hb_000037_110 Hb_005527_030 Hb_005527_030 Hb_001390_010--Hb_005527_030 Hb_000749_110 Hb_000749_110 Hb_001390_010--Hb_000749_110 Hb_001390_010--Hb_000207_190 Hb_004635_080 Hb_004635_080 Hb_001390_010--Hb_004635_080 Hb_003430_090 Hb_003430_090 Hb_000207_190--Hb_003430_090 Hb_002750_050 Hb_002750_050 Hb_000207_190--Hb_002750_050 Hb_000853_260 Hb_000853_260 Hb_000207_190--Hb_000853_260 Hb_001584_370 Hb_001584_370 Hb_000207_190--Hb_001584_370 Hb_000392_370 Hb_000392_370 Hb_000207_190--Hb_000392_370 Hb_002805_060 Hb_002805_060 Hb_000207_190--Hb_002805_060 Hb_010521_020 Hb_010521_020 Hb_001195_190--Hb_010521_020 Hb_004296_010 Hb_004296_010 Hb_001195_190--Hb_004296_010 Hb_001195_190--Hb_000505_110 Hb_001767_040 Hb_001767_040 Hb_001195_190--Hb_001767_040 Hb_001269_310 Hb_001269_310 Hb_001195_190--Hb_001269_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.99209 7.22114 6.4306 21.1907 39.4664 16.5478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.381196 0.262345 8.51184 2.4237 11.3095

CAGE analysis