Hb_000421_180

Information

Type -
Description -
Location Contig421: 120187-132022
Sequence    

Annotation

kegg
ID rcu:RCOM_0624530
description ATP binding protein, putative
nr
ID XP_002532251.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LSS5
description Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=1 SV=1
trembl
ID B9T1Y2
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0624530 PE=4 SV=1
Gene Ontology
ID GO:0005886
description interactor of constitutive active rops 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41611: 120354-125415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_180 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_001960_040 0.0976205823 - - PREDICTED: CTP synthase [Jatropha curcas]
3 Hb_001357_140 0.099593663 - - conserved hypothetical protein [Ricinus communis]
4 Hb_114893_020 0.1435550404 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_001357_180 0.148065081 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
6 Hb_002188_130 0.1482426045 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
7 Hb_000317_490 0.151515509 - - Gibberellin receptor GID1, putative [Ricinus communis]
8 Hb_000072_070 0.1535126494 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
9 Hb_035273_030 0.1543305323 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
10 Hb_001360_040 0.1555428294 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
11 Hb_005725_080 0.1557848215 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
12 Hb_003016_020 0.1564712284 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
13 Hb_003732_020 0.162335407 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
14 Hb_000761_020 0.1628506903 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
15 Hb_000733_070 0.1635300073 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
16 Hb_003018_140 0.1641626064 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
17 Hb_000573_020 0.1654403268 transcription factor TF Family: Orphans receptor histidine kinase, putative [Ricinus communis]
18 Hb_015057_060 0.1673739297 - - -
19 Hb_022181_020 0.167468169 - - PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase isoform X1 [Jatropha curcas]
20 Hb_005433_040 0.1677118125 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000421_180 Hb_000421_180 Hb_001960_040 Hb_001960_040 Hb_000421_180--Hb_001960_040 Hb_001357_140 Hb_001357_140 Hb_000421_180--Hb_001357_140 Hb_114893_020 Hb_114893_020 Hb_000421_180--Hb_114893_020 Hb_001357_180 Hb_001357_180 Hb_000421_180--Hb_001357_180 Hb_002188_130 Hb_002188_130 Hb_000421_180--Hb_002188_130 Hb_000317_490 Hb_000317_490 Hb_000421_180--Hb_000317_490 Hb_001960_040--Hb_002188_130 Hb_001960_040--Hb_001357_140 Hb_000412_110 Hb_000412_110 Hb_001960_040--Hb_000412_110 Hb_000805_120 Hb_000805_120 Hb_001960_040--Hb_000805_120 Hb_001960_040--Hb_001357_180 Hb_001357_140--Hb_001357_180 Hb_003787_020 Hb_003787_020 Hb_001357_140--Hb_003787_020 Hb_003376_040 Hb_003376_040 Hb_001357_140--Hb_003376_040 Hb_001671_080 Hb_001671_080 Hb_001357_140--Hb_001671_080 Hb_000096_090 Hb_000096_090 Hb_114893_020--Hb_000096_090 Hb_000733_070 Hb_000733_070 Hb_114893_020--Hb_000733_070 Hb_001360_040 Hb_001360_040 Hb_114893_020--Hb_001360_040 Hb_114893_020--Hb_001357_140 Hb_003732_020 Hb_003732_020 Hb_114893_020--Hb_003732_020 Hb_005000_210 Hb_005000_210 Hb_001357_180--Hb_005000_210 Hb_000139_410 Hb_000139_410 Hb_001357_180--Hb_000139_410 Hb_001357_180--Hb_002188_130 Hb_000031_060 Hb_000031_060 Hb_001357_180--Hb_000031_060 Hb_001357_180--Hb_003732_020 Hb_000445_180 Hb_000445_180 Hb_001357_180--Hb_000445_180 Hb_002188_130--Hb_005000_210 Hb_001269_680 Hb_001269_680 Hb_002188_130--Hb_001269_680 Hb_005147_100 Hb_005147_100 Hb_002188_130--Hb_005147_100 Hb_000230_200 Hb_000230_200 Hb_002188_130--Hb_000230_200 Hb_004678_040 Hb_004678_040 Hb_002188_130--Hb_004678_040 Hb_000141_040 Hb_000141_040 Hb_002188_130--Hb_000141_040 Hb_000032_440 Hb_000032_440 Hb_000317_490--Hb_000032_440 Hb_002016_170 Hb_002016_170 Hb_000317_490--Hb_002016_170 Hb_002183_070 Hb_002183_070 Hb_000317_490--Hb_002183_070 Hb_011316_100 Hb_011316_100 Hb_000317_490--Hb_011316_100 Hb_000072_070 Hb_000072_070 Hb_000317_490--Hb_000072_070 Hb_000575_030 Hb_000575_030 Hb_000317_490--Hb_000575_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.3854 7.58518 17.5366 8.45552 10.8508 14.2859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0039 12.0708 36.0362 6.792 7.75165

CAGE analysis