Hb_000421_190

Information

Type -
Description -
Location Contig421: 137048-139954
Sequence    

Annotation

kegg
ID rcu:RCOM_0833840
description hypothetical protein
nr
ID XP_002527045.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SM26
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0833840 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002248_050 0.1153500078 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
3 Hb_000567_250 0.1819381968 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
4 Hb_002301_320 0.1824957337 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
5 Hb_103873_010 0.1826252198 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
6 Hb_000329_600 0.1894866018 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
7 Hb_009680_050 0.1922964966 - - -
8 Hb_074590_010 0.1967337096 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
9 Hb_134789_010 0.1973973701 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
10 Hb_001488_100 0.1981142154 - - -
11 Hb_002835_170 0.1984602626 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
12 Hb_000951_060 0.199839897 - - mads box protein, putative [Ricinus communis]
13 Hb_002687_050 0.2000034328 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
14 Hb_001396_230 0.2019348018 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
15 Hb_000300_010 0.2029108391 - - multidrug resistance pump, putative [Ricinus communis]
16 Hb_029223_030 0.2032479438 - - hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
17 Hb_003497_030 0.2036585939 - - ADP-ribosylation factor, putative [Ricinus communis]
18 Hb_012725_090 0.2077353152 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
19 Hb_001396_220 0.2106751666 - - nuclear transport factor, putative [Ricinus communis]
20 Hb_001606_070 0.2115976662 - - fimbrin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000421_190 Hb_000421_190 Hb_002248_050 Hb_002248_050 Hb_000421_190--Hb_002248_050 Hb_000567_250 Hb_000567_250 Hb_000421_190--Hb_000567_250 Hb_002301_320 Hb_002301_320 Hb_000421_190--Hb_002301_320 Hb_103873_010 Hb_103873_010 Hb_000421_190--Hb_103873_010 Hb_000329_600 Hb_000329_600 Hb_000421_190--Hb_000329_600 Hb_009680_050 Hb_009680_050 Hb_000421_190--Hb_009680_050 Hb_002248_050--Hb_103873_010 Hb_002248_050--Hb_002301_320 Hb_002835_170 Hb_002835_170 Hb_002248_050--Hb_002835_170 Hb_006787_040 Hb_006787_040 Hb_002248_050--Hb_006787_040 Hb_002248_050--Hb_000329_600 Hb_000249_130 Hb_000249_130 Hb_000567_250--Hb_000249_130 Hb_003030_080 Hb_003030_080 Hb_000567_250--Hb_003030_080 Hb_004453_140 Hb_004453_140 Hb_000567_250--Hb_004453_140 Hb_002685_090 Hb_002685_090 Hb_000567_250--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_000567_250--Hb_000041_070 Hb_017124_020 Hb_017124_020 Hb_000567_250--Hb_017124_020 Hb_001488_100 Hb_001488_100 Hb_002301_320--Hb_001488_100 Hb_002301_320--Hb_002835_170 Hb_000571_070 Hb_000571_070 Hb_002301_320--Hb_000571_070 Hb_002301_320--Hb_103873_010 Hb_003001_030 Hb_003001_030 Hb_002301_320--Hb_003001_030 Hb_002038_060 Hb_002038_060 Hb_103873_010--Hb_002038_060 Hb_014067_010 Hb_014067_010 Hb_103873_010--Hb_014067_010 Hb_001999_060 Hb_001999_060 Hb_103873_010--Hb_001999_060 Hb_026048_100 Hb_026048_100 Hb_103873_010--Hb_026048_100 Hb_005000_290 Hb_005000_290 Hb_000329_600--Hb_005000_290 Hb_015934_020 Hb_015934_020 Hb_000329_600--Hb_015934_020 Hb_001396_220 Hb_001396_220 Hb_000329_600--Hb_001396_220 Hb_000329_600--Hb_004453_140 Hb_000427_110 Hb_000427_110 Hb_000329_600--Hb_000427_110 Hb_002374_460 Hb_002374_460 Hb_000329_600--Hb_002374_460 Hb_074590_010 Hb_074590_010 Hb_009680_050--Hb_074590_010 Hb_012725_090 Hb_012725_090 Hb_009680_050--Hb_012725_090 Hb_064997_010 Hb_064997_010 Hb_009680_050--Hb_064997_010 Hb_094744_010 Hb_094744_010 Hb_009680_050--Hb_094744_010 Hb_001514_230 Hb_001514_230 Hb_009680_050--Hb_001514_230 Hb_000300_010 Hb_000300_010 Hb_009680_050--Hb_000300_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.89036 0.149523 0 0.0616888 2.08759 10.5337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.18796 8.64958 12.4339 0.388478 0

CAGE analysis