Hb_000421_220

Information

Type -
Description -
Location Contig421: 155698-157285
Sequence    

Annotation

kegg
ID rcu:RCOM_1398820
description tRNA-splicing endonuclease subunit Sen2-2, putative (EC:3.1.27.9)
nr
ID XP_012080034.1
description PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
swissprot
ID Q9LSS3
description tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana GN=SEN2 PE=2 SV=1
trembl
ID A0A067K4C8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11452 PE=4 SV=1
Gene Ontology
ID GO:0000213
description trna-splicing endonuclease subunit sen2-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41616: 154694-158139 , PASA_asmbl_41617: 156445-158139 , PASA_asmbl_41618: 154705-158139
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_220 0.0 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
2 Hb_002183_060 0.0578402954 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
3 Hb_008453_030 0.0626866211 - - Thioredoxin superfamily protein [Theobroma cacao]
4 Hb_004934_100 0.0631461989 - - conserved hypothetical protein [Ricinus communis]
5 Hb_025240_040 0.0661485533 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
6 Hb_001234_100 0.0678307609 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
7 Hb_015934_070 0.0703993777 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
8 Hb_033594_120 0.0710605975 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
9 Hb_000696_330 0.0726290125 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
10 Hb_003633_030 0.0734135293 - - f-actin capping protein alpha, putative [Ricinus communis]
11 Hb_000061_210 0.0742244788 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
12 Hb_003697_040 0.0749814523 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
13 Hb_003125_010 0.0750950427 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
14 Hb_011360_070 0.075774037 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
15 Hb_001252_130 0.0768819719 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
16 Hb_003605_090 0.0799431028 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
17 Hb_000599_300 0.0811112453 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
18 Hb_000477_060 0.0821718504 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
19 Hb_010361_010 0.0831300731 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
20 Hb_000599_250 0.0839399477 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]

Gene co-expression network

sample Hb_000421_220 Hb_000421_220 Hb_002183_060 Hb_002183_060 Hb_000421_220--Hb_002183_060 Hb_008453_030 Hb_008453_030 Hb_000421_220--Hb_008453_030 Hb_004934_100 Hb_004934_100 Hb_000421_220--Hb_004934_100 Hb_025240_040 Hb_025240_040 Hb_000421_220--Hb_025240_040 Hb_001234_100 Hb_001234_100 Hb_000421_220--Hb_001234_100 Hb_015934_070 Hb_015934_070 Hb_000421_220--Hb_015934_070 Hb_001386_040 Hb_001386_040 Hb_002183_060--Hb_001386_040 Hb_002183_060--Hb_008453_030 Hb_002183_060--Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_002183_060--Hb_031862_100 Hb_003697_040 Hb_003697_040 Hb_002183_060--Hb_003697_040 Hb_008453_030--Hb_004934_100 Hb_000107_160 Hb_000107_160 Hb_008453_030--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_008453_030--Hb_000061_210 Hb_000373_070 Hb_000373_070 Hb_008453_030--Hb_000373_070 Hb_000081_160 Hb_000081_160 Hb_008453_030--Hb_000081_160 Hb_000599_250 Hb_000599_250 Hb_004934_100--Hb_000599_250 Hb_001489_080 Hb_001489_080 Hb_004934_100--Hb_001489_080 Hb_004934_100--Hb_003697_040 Hb_000985_030 Hb_000985_030 Hb_004934_100--Hb_000985_030 Hb_004218_110 Hb_004218_110 Hb_025240_040--Hb_004218_110 Hb_004254_120 Hb_004254_120 Hb_025240_040--Hb_004254_120 Hb_025240_040--Hb_015934_070 Hb_127552_030 Hb_127552_030 Hb_025240_040--Hb_127552_030 Hb_002759_060 Hb_002759_060 Hb_025240_040--Hb_002759_060 Hb_001234_100--Hb_025240_040 Hb_003502_090 Hb_003502_090 Hb_001234_100--Hb_003502_090 Hb_001234_100--Hb_003697_040 Hb_001205_150 Hb_001205_150 Hb_001234_100--Hb_001205_150 Hb_000479_190 Hb_000479_190 Hb_001234_100--Hb_000479_190 Hb_015934_070--Hb_031862_100 Hb_015934_070--Hb_127552_030 Hb_006907_130 Hb_006907_130 Hb_015934_070--Hb_006907_130 Hb_007017_030 Hb_007017_030 Hb_015934_070--Hb_007017_030 Hb_001369_690 Hb_001369_690 Hb_015934_070--Hb_001369_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.05018 2.60191 3.82709 5.86484 4.66571 7.79301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.75963 10.2013 6.79838 5.01807 6.32313

CAGE analysis