Hb_000422_020

Information

Type -
Description -
Location Contig422: 26516-27637
Sequence    

Annotation

kegg
ID rcu:RCOM_1282440
description short chain alcohol dehydrogenase, putative (EC:1.1.1.100)
nr
ID XP_012075921.1
description PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
swissprot
ID Q94KL7
description Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1
trembl
ID A0A067KS38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11952 PE=3 SV=1
Gene Ontology
ID GO:0004316
description secoisolariciresinol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41717: 26670-27712
cDNA
(Sanger)
(ID:Location)		 018_C15.ab1: 26670-27496

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000422_020 0.0 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
2 Hb_000575_110 0.092375289 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
3 Hb_000683_010 0.0961320395 - - Interleukin-1 receptor-associated kinase, putative [Ricinus communis]
4 Hb_008768_010 0.0997845821 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
5 Hb_003900_050 0.1028541615 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
6 Hb_056101_010 0.103789235 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
7 Hb_025526_010 0.1081170208 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
8 Hb_011282_070 0.1178957054 - - ATP binding protein, putative [Ricinus communis]
9 Hb_004881_060 0.1203440679 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
10 Hb_004463_040 0.1211532193 - - -
11 Hb_000380_130 0.1253899237 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
12 Hb_002048_010 0.1281628963 - - unknown [Lotus japonicus]
13 Hb_007894_260 0.1349359639 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_005116_010 0.1352001629 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
15 Hb_001104_210 0.1361855361 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
16 Hb_003090_180 0.1379845928 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
17 Hb_001218_070 0.1381213492 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
18 Hb_006970_100 0.1383650458 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_006788_150 0.1387472472 - - conserved hypothetical protein [Ricinus communis]
20 Hb_175968_010 0.1389708091 - - hypothetical protein JCGZ_21281 [Jatropha curcas]

Gene co-expression network

sample Hb_000422_020 Hb_000422_020 Hb_000575_110 Hb_000575_110 Hb_000422_020--Hb_000575_110 Hb_000683_010 Hb_000683_010 Hb_000422_020--Hb_000683_010 Hb_008768_010 Hb_008768_010 Hb_000422_020--Hb_008768_010 Hb_003900_050 Hb_003900_050 Hb_000422_020--Hb_003900_050 Hb_056101_010 Hb_056101_010 Hb_000422_020--Hb_056101_010 Hb_025526_010 Hb_025526_010 Hb_000422_020--Hb_025526_010 Hb_009486_100 Hb_009486_100 Hb_000575_110--Hb_009486_100 Hb_000575_110--Hb_056101_010 Hb_000575_110--Hb_025526_010 Hb_002048_010 Hb_002048_010 Hb_000575_110--Hb_002048_010 Hb_000575_110--Hb_003900_050 Hb_000683_010--Hb_008768_010 Hb_011282_070 Hb_011282_070 Hb_000683_010--Hb_011282_070 Hb_020332_040 Hb_020332_040 Hb_000683_010--Hb_020332_040 Hb_027141_010 Hb_027141_010 Hb_000683_010--Hb_027141_010 Hb_000683_010--Hb_003900_050 Hb_004881_060 Hb_004881_060 Hb_008768_010--Hb_004881_060 Hb_008768_010--Hb_025526_010 Hb_000205_210 Hb_000205_210 Hb_008768_010--Hb_000205_210 Hb_011671_420 Hb_011671_420 Hb_008768_010--Hb_011671_420 Hb_004200_040 Hb_004200_040 Hb_003900_050--Hb_004200_040 Hb_004463_040 Hb_004463_040 Hb_003900_050--Hb_004463_040 Hb_003900_050--Hb_000205_210 Hb_000140_260 Hb_000140_260 Hb_003900_050--Hb_000140_260 Hb_003900_050--Hb_004881_060 Hb_000684_020 Hb_000684_020 Hb_003900_050--Hb_000684_020 Hb_056101_010--Hb_025526_010 Hb_056101_010--Hb_004881_060 Hb_005116_010 Hb_005116_010 Hb_056101_010--Hb_005116_010 Hb_056101_010--Hb_009486_100 Hb_006788_150 Hb_006788_150 Hb_025526_010--Hb_006788_150 Hb_000661_230 Hb_000661_230 Hb_025526_010--Hb_000661_230 Hb_025526_010--Hb_004881_060 Hb_003060_080 Hb_003060_080 Hb_025526_010--Hb_003060_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68323 203.192 79.7171 104.717 0.302335 1.1829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53196 1.09197 1.73778 1478.57 255.093

CAGE analysis