Hb_000422_030

Information

Type -
Description -
Location Contig422: 28641-32231
Sequence    

Annotation

kegg
ID tcc:TCM_041323
description Peptidyl-prolyl cis-trans isomerase G
nr
ID XP_012084579.1
description PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K547
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20209 PE=4 SV=1
Gene Ontology
ID GO:0016853
description peptidyl-prolyl cis-trans isomerase g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41717: 26670-27712 , PASA_asmbl_41718: 28664-32223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000422_030 0.0 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
2 Hb_000649_230 0.0970213543 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
3 Hb_001269_640 0.100279321 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]
4 Hb_000690_190 0.1010111584 - - 40S ribosomal protein S7, putative [Ricinus communis]
5 Hb_156635_010 0.1014319362 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
6 Hb_010315_060 0.1029849728 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
7 Hb_022132_050 0.1042031808 - - GTP binding protein, putative [Ricinus communis]
8 Hb_000236_390 0.1052644827 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
9 Hb_006132_110 0.1060059039 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004785_190 0.1072613888 - - PHD finger family protein [Populus trichocarpa]
11 Hb_153258_050 0.1076375928 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
12 Hb_014720_120 0.1077661144 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
13 Hb_000610_010 0.1079491717 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
14 Hb_007885_060 0.1091979843 - - replication factor C 40 kDa family protein [Populus trichocarpa]
15 Hb_004096_090 0.1105617788 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
16 Hb_000300_260 0.1110750846 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
17 Hb_012565_070 0.1111523414 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
18 Hb_004312_010 0.1113405931 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
19 Hb_000010_110 0.1113468191 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
20 Hb_002872_030 0.1121947831 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]

Gene co-expression network

sample Hb_000422_030 Hb_000422_030 Hb_000649_230 Hb_000649_230 Hb_000422_030--Hb_000649_230 Hb_001269_640 Hb_001269_640 Hb_000422_030--Hb_001269_640 Hb_000690_190 Hb_000690_190 Hb_000422_030--Hb_000690_190 Hb_156635_010 Hb_156635_010 Hb_000422_030--Hb_156635_010 Hb_010315_060 Hb_010315_060 Hb_000422_030--Hb_010315_060 Hb_022132_050 Hb_022132_050 Hb_000422_030--Hb_022132_050 Hb_000392_230 Hb_000392_230 Hb_000649_230--Hb_000392_230 Hb_000649_230--Hb_010315_060 Hb_027428_010 Hb_027428_010 Hb_000649_230--Hb_027428_010 Hb_073973_130 Hb_073973_130 Hb_000649_230--Hb_073973_130 Hb_000649_230--Hb_022132_050 Hb_003213_010 Hb_003213_010 Hb_000649_230--Hb_003213_010 Hb_000926_180 Hb_000926_180 Hb_001269_640--Hb_000926_180 Hb_001269_640--Hb_010315_060 Hb_000331_250 Hb_000331_250 Hb_001269_640--Hb_000331_250 Hb_027043_020 Hb_027043_020 Hb_001269_640--Hb_027043_020 Hb_001195_260 Hb_001195_260 Hb_001269_640--Hb_001195_260 Hb_002946_190 Hb_002946_190 Hb_000690_190--Hb_002946_190 Hb_002307_180 Hb_002307_180 Hb_000690_190--Hb_002307_180 Hb_000599_260 Hb_000599_260 Hb_000690_190--Hb_000599_260 Hb_007878_010 Hb_007878_010 Hb_000690_190--Hb_007878_010 Hb_161574_020 Hb_161574_020 Hb_000690_190--Hb_161574_020 Hb_002171_060 Hb_002171_060 Hb_000690_190--Hb_002171_060 Hb_007451_010 Hb_007451_010 Hb_156635_010--Hb_007451_010 Hb_000220_010 Hb_000220_010 Hb_156635_010--Hb_000220_010 Hb_014720_120 Hb_014720_120 Hb_156635_010--Hb_014720_120 Hb_002740_030 Hb_002740_030 Hb_156635_010--Hb_002740_030 Hb_003389_040 Hb_003389_040 Hb_156635_010--Hb_003389_040 Hb_007441_190 Hb_007441_190 Hb_156635_010--Hb_007441_190 Hb_010315_060--Hb_000392_230 Hb_010315_060--Hb_001195_260 Hb_058972_010 Hb_058972_010 Hb_010315_060--Hb_058972_010 Hb_004122_040 Hb_004122_040 Hb_010315_060--Hb_004122_040 Hb_010315_060--Hb_022132_050 Hb_022132_050--Hb_073973_130 Hb_002872_030 Hb_002872_030 Hb_022132_050--Hb_002872_030 Hb_022132_050--Hb_000392_230 Hb_006588_070 Hb_006588_070 Hb_022132_050--Hb_006588_070 Hb_022132_050--Hb_027428_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1569 13.1001 24.1409 16.7434 10.8709 17.2962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4698 23.4103 8.88139 4.97252 7.13608

CAGE analysis