Hb_000422_040

Information

Type -
Description -
Location Contig422: 41161-41490
Sequence    

Annotation

kegg
ID cic:CICLE_v10013147mg
description hypothetical protein
nr
ID XP_006430106.1
description hypothetical protein CICLE_v10013147mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4T1G9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013147mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41720: 40986-41765
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000422_040 0.0 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
2 Hb_033312_100 0.0791840908 - - -
3 Hb_046204_010 0.0969754862 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
4 Hb_074674_010 0.1024293807 - - Cell division cycle protein cdt2, putative [Ricinus communis]
5 Hb_002025_280 0.1028230658 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
6 Hb_001384_030 0.1036205141 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
7 Hb_002766_070 0.1058107776 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
8 Hb_000531_010 0.1073766886 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
9 Hb_007304_020 0.1227402605 - - PREDICTED: uncharacterized protein LOC100256879 [Vitis vinifera]
10 Hb_059502_010 0.1272962695 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
11 Hb_000163_020 0.1330655101 - - -
12 Hb_001205_280 0.1350228195 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
13 Hb_010369_020 0.137076326 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
14 Hb_023386_070 0.1387145572 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
15 Hb_005306_060 0.1405101332 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
16 Hb_000035_230 0.146131664 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
17 Hb_085600_010 0.1493560834 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
18 Hb_001247_060 0.1505777982 - - zinc finger protein, putative [Ricinus communis]
19 Hb_180864_010 0.1544805257 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
20 Hb_006588_100 0.1547205607 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000422_040 Hb_000422_040 Hb_033312_100 Hb_033312_100 Hb_000422_040--Hb_033312_100 Hb_046204_010 Hb_046204_010 Hb_000422_040--Hb_046204_010 Hb_074674_010 Hb_074674_010 Hb_000422_040--Hb_074674_010 Hb_002025_280 Hb_002025_280 Hb_000422_040--Hb_002025_280 Hb_001384_030 Hb_001384_030 Hb_000422_040--Hb_001384_030 Hb_002766_070 Hb_002766_070 Hb_000422_040--Hb_002766_070 Hb_033312_100--Hb_002025_280 Hb_000531_010 Hb_000531_010 Hb_033312_100--Hb_000531_010 Hb_033312_100--Hb_002766_070 Hb_059502_010 Hb_059502_010 Hb_033312_100--Hb_059502_010 Hb_033312_100--Hb_046204_010 Hb_046204_010--Hb_001384_030 Hb_046204_010--Hb_074674_010 Hb_007304_020 Hb_007304_020 Hb_046204_010--Hb_007304_020 Hb_000138_120 Hb_000138_120 Hb_046204_010--Hb_000138_120 Hb_074674_010--Hb_001384_030 Hb_023386_070 Hb_023386_070 Hb_074674_010--Hb_023386_070 Hb_001205_280 Hb_001205_280 Hb_074674_010--Hb_001205_280 Hb_010369_020 Hb_010369_020 Hb_074674_010--Hb_010369_020 Hb_061361_010 Hb_061361_010 Hb_074674_010--Hb_061361_010 Hb_002025_280--Hb_002766_070 Hb_002025_280--Hb_000531_010 Hb_085600_010 Hb_085600_010 Hb_002025_280--Hb_085600_010 Hb_001242_170 Hb_001242_170 Hb_002025_280--Hb_001242_170 Hb_180864_010 Hb_180864_010 Hb_002025_280--Hb_180864_010 Hb_001384_030--Hb_001205_280 Hb_001384_030--Hb_023386_070 Hb_001384_030--Hb_061361_010 Hb_001384_030--Hb_010369_020 Hb_002766_070--Hb_085600_010 Hb_002766_070--Hb_000531_010 Hb_002766_070--Hb_001242_170 Hb_002766_070--Hb_180864_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 13.8827 11.8467 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297835 0 0 1.80339 0

CAGE analysis