Hb_000422_060

Information

Type transcription factor
Description TF Family: OFP
Location Contig422: 75433-75951
Sequence    

Annotation

kegg
ID rcu:RCOM_1282480
description hypothetical protein
nr
ID XP_002523863.1
description hypothetical protein RCOM_1282480 [Ricinus communis]
swissprot
ID Q3EAL1
description Transcription repressor OFP6 OS=Arabidopsis thaliana GN=OFP6 PE=1 SV=1
trembl
ID B9SCZ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1282480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000422_060 0.0 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
2 Hb_032299_020 0.0706015057 - - tonoplast intrinsic protein, putative [Ricinus communis]
3 Hb_007919_010 0.0778036089 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000349_280 0.0863174009 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000098_230 0.0875788347 - - Potassium channel AKT2/3, putative [Ricinus communis]
6 Hb_002186_170 0.0887941665 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
7 Hb_001584_250 0.0959332849 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
8 Hb_000646_040 0.0968675503 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
9 Hb_001541_170 0.0969315658 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
10 Hb_000201_050 0.0980168412 - - -
11 Hb_000438_180 0.099989595 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_006618_100 0.1024082115 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
13 Hb_003582_030 0.1037015574 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
14 Hb_003711_050 0.1045860068 - - Isoflavone reductase, putative [Ricinus communis]
15 Hb_012217_010 0.1058911171 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
16 Hb_010217_020 0.1067590889 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
17 Hb_001579_160 0.1073593374 - - PREDICTED: kininogen-1-like [Jatropha curcas]
18 Hb_007441_100 0.1095056617 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
19 Hb_000378_030 0.1095604979 - - conserved hypothetical protein [Ricinus communis]
20 Hb_187906_010 0.1137348477 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]

Gene co-expression network

sample Hb_000422_060 Hb_000422_060 Hb_032299_020 Hb_032299_020 Hb_000422_060--Hb_032299_020 Hb_007919_010 Hb_007919_010 Hb_000422_060--Hb_007919_010 Hb_000349_280 Hb_000349_280 Hb_000422_060--Hb_000349_280 Hb_000098_230 Hb_000098_230 Hb_000422_060--Hb_000098_230 Hb_002186_170 Hb_002186_170 Hb_000422_060--Hb_002186_170 Hb_001584_250 Hb_001584_250 Hb_000422_060--Hb_001584_250 Hb_032299_020--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_032299_020--Hb_000429_080 Hb_000438_180 Hb_000438_180 Hb_032299_020--Hb_000438_180 Hb_187906_010 Hb_187906_010 Hb_032299_020--Hb_187906_010 Hb_012217_010 Hb_012217_010 Hb_032299_020--Hb_012217_010 Hb_180088_010 Hb_180088_010 Hb_007919_010--Hb_180088_010 Hb_007919_010--Hb_000098_230 Hb_006351_050 Hb_006351_050 Hb_007919_010--Hb_006351_050 Hb_001500_020 Hb_001500_020 Hb_007919_010--Hb_001500_020 Hb_001579_160 Hb_001579_160 Hb_007919_010--Hb_001579_160 Hb_006618_100 Hb_006618_100 Hb_000349_280--Hb_006618_100 Hb_010217_020 Hb_010217_020 Hb_000349_280--Hb_010217_020 Hb_000349_280--Hb_012217_010 Hb_032260_040 Hb_032260_040 Hb_000349_280--Hb_032260_040 Hb_007441_100 Hb_007441_100 Hb_000349_280--Hb_007441_100 Hb_001541_170 Hb_001541_170 Hb_000098_230--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_000098_230--Hb_003582_030 Hb_001418_050 Hb_001418_050 Hb_000098_230--Hb_001418_050 Hb_000098_230--Hb_007441_100 Hb_000175_370 Hb_000175_370 Hb_002186_170--Hb_000175_370 Hb_002186_170--Hb_000098_230 Hb_002186_170--Hb_001541_170 Hb_002186_170--Hb_003582_030 Hb_000646_040 Hb_000646_040 Hb_002186_170--Hb_000646_040 Hb_001584_250--Hb_000429_080 Hb_001584_250--Hb_000438_180 Hb_000201_050 Hb_000201_050 Hb_001584_250--Hb_000201_050 Hb_009851_120 Hb_009851_120 Hb_001584_250--Hb_009851_120 Hb_000007_020 Hb_000007_020 Hb_001584_250--Hb_000007_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.02123 0.384567 4.87606 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0822463 0.561122

CAGE analysis