Hb_000422_080

Information

Type transcription factor
Description TF Family: E2F-DP
Location Contig422: 84009-94616
Sequence    

Annotation

kegg
ID tcc:TCM_041291
description Transcription factor E2F isoform 1
nr
ID XP_012075044.1
description PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
swissprot
ID Q9FV71
description Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB PE=1 SV=1
trembl
ID A0A067KKC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10856 PE=3 SV=1
Gene Ontology
ID GO:0005634
description e2f transcription factor-1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41728: 89429-89687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000422_080 0.0 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
2 Hb_004943_040 0.0911023187 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
3 Hb_000414_080 0.0928964066 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
4 Hb_000487_370 0.0989910854 - - -
5 Hb_000342_170 0.1003921055 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
6 Hb_000283_140 0.1022432878 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
7 Hb_002249_080 0.1063620501 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
8 Hb_000300_510 0.1105458687 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
9 Hb_000570_020 0.1119183725 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
10 Hb_000140_060 0.1120510808 - - 50S ribosomal protein L5, putative [Ricinus communis]
11 Hb_002942_230 0.1136990854 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
12 Hb_000566_010 0.1150110312 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
13 Hb_000000_310 0.1152486705 - - metalloendopeptidase, putative [Ricinus communis]
14 Hb_002217_080 0.1164371741 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
15 Hb_003994_080 0.1174457032 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
16 Hb_001619_060 0.1178248417 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
17 Hb_001439_070 0.1195677984 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_000357_070 0.1199752486 - - -
19 Hb_004052_110 0.1201265464 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
20 Hb_001059_060 0.1218250248 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_000422_080 Hb_000422_080 Hb_004943_040 Hb_004943_040 Hb_000422_080--Hb_004943_040 Hb_000414_080 Hb_000414_080 Hb_000422_080--Hb_000414_080 Hb_000487_370 Hb_000487_370 Hb_000422_080--Hb_000487_370 Hb_000342_170 Hb_000342_170 Hb_000422_080--Hb_000342_170 Hb_000283_140 Hb_000283_140 Hb_000422_080--Hb_000283_140 Hb_002249_080 Hb_002249_080 Hb_000422_080--Hb_002249_080 Hb_000570_020 Hb_000570_020 Hb_004943_040--Hb_000570_020 Hb_004943_040--Hb_000283_140 Hb_001865_100 Hb_001865_100 Hb_004943_040--Hb_001865_100 Hb_000157_140 Hb_000157_140 Hb_004943_040--Hb_000157_140 Hb_002805_090 Hb_002805_090 Hb_004943_040--Hb_002805_090 Hb_000414_080--Hb_000487_370 Hb_000510_190 Hb_000510_190 Hb_000414_080--Hb_000510_190 Hb_000414_080--Hb_002249_080 Hb_003175_070 Hb_003175_070 Hb_000414_080--Hb_003175_070 Hb_002374_450 Hb_002374_450 Hb_000414_080--Hb_002374_450 Hb_000487_370--Hb_000510_190 Hb_000594_060 Hb_000594_060 Hb_000487_370--Hb_000594_060 Hb_004052_110 Hb_004052_110 Hb_000487_370--Hb_004052_110 Hb_001059_060 Hb_001059_060 Hb_000487_370--Hb_001059_060 Hb_000487_370--Hb_002249_080 Hb_000510_150 Hb_000510_150 Hb_000342_170--Hb_000510_150 Hb_132082_010 Hb_132082_010 Hb_000342_170--Hb_132082_010 Hb_000665_170 Hb_000665_170 Hb_000342_170--Hb_000665_170 Hb_003777_030 Hb_003777_030 Hb_000342_170--Hb_003777_030 Hb_000860_060 Hb_000860_060 Hb_000342_170--Hb_000860_060 Hb_002687_200 Hb_002687_200 Hb_000342_170--Hb_002687_200 Hb_012807_150 Hb_012807_150 Hb_000283_140--Hb_012807_150 Hb_000638_060 Hb_000638_060 Hb_000283_140--Hb_000638_060 Hb_000283_140--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000283_140--Hb_000271_220 Hb_000585_110 Hb_000585_110 Hb_002249_080--Hb_000585_110 Hb_006916_050 Hb_006916_050 Hb_002249_080--Hb_006916_050 Hb_000007_090 Hb_000007_090 Hb_002249_080--Hb_000007_090 Hb_015884_020 Hb_015884_020 Hb_002249_080--Hb_015884_020 Hb_002828_060 Hb_002828_060 Hb_002249_080--Hb_002828_060 Hb_002249_080--Hb_000510_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.528008 1.86387 3.28886 4.47726 0.436581 0.890181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.804392 0.851101 0.411545 1.3049 4.26325

CAGE analysis